RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA938397" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA938397 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22591075 22591075 PRJNA938397_S_NODE_6678_length_387_cov_36.108571_g6440_i0 PRJNA938397 6678 387 36.108571 139.74016977 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 128 1.55e-33   NR XP_044547662.1 51637 g6440 i0 72.7 8.42635658914729 88 23 68.2 1 379 116 178 264 XP_044547662.1 uncharacterized protein C9374_005775 [Naegleria lovaniensis] diamond 3261 128 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
31921499 31921499 PRJNA938397_S_NODE_23457_length_228_cov_5.696335_g23216_i0 PRJNA938397 23457 228 5.696335 12.9876438 Leishmania panamensis 5679 Euglenozoa other_Eukaryota 42.7 0.0328   NR XP_010700054.1 5679 g23216 i0 39.6 1.31578947368421 53 27 63.2 1 22 165 2637 2689 XP_010700054.1 hypothetical protein LPMP_262340 [Leishmania panamensis] diamond 300 42.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania panamensis
32900633 32900633 PRJNA938397_S_NODE_32320_length_194_cov_3.070064_g32079_i0 PRJNA938397 32320 194 3.070064 5.95592416 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 55.1 8.53e-7   NR XP_044564909.1 5763 g32079 i0 51.1 0.695876288659794 45 22 69.6 0 3 137 413 457 XP_044564909.1 uncharacterized protein FDP41_013410 [Naegleria fowleri] diamond 135 55.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;