RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA938397" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA938397 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
913579 913579 PRJNA938397_S_NODE_42621_length_168_cov_3.961832_g42380_i0 PRJNA938397 42621 168 3.961832 6.65587776 Dictyostelium discoideum 44689 Evosea other_Eukaryota 122 1.06e-23   NTclustered gi|111218959|ref|XM_001134475.1| 352472 g42380 i0 81.169 10.1904761904762 154 27 91 2 15 167 7 159 Dictyostelium discoideum AX4 hypothetical protein (fttB) mRNA, complete cds blastn 1712 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
9841119 9841119 PRJNA938397_S_NODE_30828_length_199_cov_1.728395_g30587_i0 PRJNA938397 30828 199 1.728395 3.43950605 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 279 7.280000000000001e-71   NTclustered gi|330902856|gb|JF298254.1| 1017091 g30587 i0 94.149 9.66834170854271 188 4 94 5 1 188 844 1024 Cochliopodium larifeili clone 902 18S ribosomal RNA gene, partial sequence blastn 1924 279 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
14941490 14941490 PRJNA938397_S_NODE_41992_length_169_cov_6.772727_g41751_i0 PRJNA938397 41992 169 6.772727 11.44590863 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 237 3.63e-58   NTclustered gi|330902855|gb|JF298253.1| 1017091 g41751 i0 97.143 61.2899408284024 140 4 83 0 8 147 1599 1738 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 10358 237 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
31707100 31707100 PRJNA938397_S_NODE_15717_length_276_cov_29.058577_g15476_i0 PRJNA938397 15717 276 29.058577 80.20167252 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52 5.15e-6   NR PRP79914.1 1890364 g15476 i0 63 3.05434782608696 46 17 50 0 271 134 74 119 PRP79914.1 hypothetical protein PROFUN_12403 [Planoprotostelium fungivorum] diamond 843 52 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;