RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA937226", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Peploviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA937226 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15283686 15283686 PRJNA937226_S_NODE_1572_length_467_cov_3.906699_g1447_i0 PRJNA937226 1572 467 3.906699 18.24428433 root 1 Root_unresolved Root_unresolved 355 3.09e-93   NTclustered gi|2581708911|gb|OR405519.1| 10298 g1447 i0 85.217 73.6595289079229 345 51 74 0 1 345 77116 77460 Mutant Human alphaherpesvirus 1 clone recombinant UL34(CL13) SUP7, complete genome blastn 34399 355 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
17833293 17833293 PRJNA937226_S_NODE_16614_length_200_cov_3.105960_g16487_i0 PRJNA937226 16614 200 3.10596 6.21192 root 1 Root_unresolved Root_unresolved 255 1.23e-63   NTclustered gi|2581708911|gb|OR405519.1| 10298 g16487 i0 91.848 92 184 14 92 1 18 200 77339 77156 Mutant Human alphaherpesvirus 1 clone recombinant UL34(CL13) SUP7, complete genome blastn 18400 255 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
19107154 19107154 PRJNA937226_S_NODE_3995_length_330_cov_3.921708_g3868_i0 PRJNA937226 3995 330 3.921708 12.9416364 root 1 Root_unresolved Root_unresolved 383 9.699999999999998e-102   NTclustered gi|2581708911|gb|OR405519.1| 10298 g3868 i0 89.474 89.1090909090909 304 31 92 1 3 305 77036 77339 Mutant Human alphaherpesvirus 1 clone recombinant UL34(CL13) SUP7, complete genome blastn 29406 383 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
24207387 24207387 PRJNA937226_S_NODE_7519_length_268_cov_1.840183_g7392_i0 PRJNA937226 7519 268 1.840183 4.93169044 root 1 Root_unresolved Root_unresolved 350 7.77e-92   NTclustered gi|2581708911|gb|OR405519.1| 10298 g7392 i0 95.833 80.2462686567164 216 9 81 0 53 268 77460 77245 Mutant Human alphaherpesvirus 1 clone recombinant UL34(CL13) SUP7, complete genome blastn 21506 351 0.997150997150997 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;