RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA937226" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA937226 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1255749 1255749 PRJNA937226_S_NODE_22761_length_176_cov_1.614173_g22634_i0 PRJNA937226 22761 176 1.614173 2.84094448 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.015   NTclustered gi|2785771450|ref|XM_067212390.1| 117008 g22634 i0 100 0.318181818181818 28 0 16 0 134 161 1332 1305 Cryptosporidium andersoni uncharacterized protein (cand_021600), partial mRNA blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium andersoni
11115493 11115493 PRJNA937226_S_NODE_1069_length_538_cov_3.697342_g950_i0 PRJNA937226 1069 538 3.697342 19.89169996 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 771 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g950 i0 96.574 471.652416356877 467 13 86 3 1 465 62 527 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 253749 771 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
17833288 17833288 PRJNA937226_S_NODE_15034_length_208_cov_1.962264_g14907_i0 PRJNA937226 15034 208 1.962264 4.08150912 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 315 2.1e-81   NTclustered gi|833494855|ref|XM_012915027.1| 5866 g14907 i0 93.81 837.038461538462 210 11 100 2 1 208 298 89 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 174104 318 0.990566037735849 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;