RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA937226" and tax_kingdom = "Shotokuvirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA937226 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15283666 15283666 PRJNA937226_S_NODE_10112_length_242_cov_2.694301_g9985_i0 PRJNA937226 10112 242 2.694301 6.52020842 Betapolyomavirus 1891714 Viruses Viruses 448 2.3799999999999995e-121   NTclustered gi|5053089|gb|AF156105.1| 1891767 g9985 i0 100 117.413223140496 242 0 100 0 1 242 4132 3891 Simian virus 40 strain VA45-54-2, complete genome blastn 28414 448 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
27972579 27972579 PRJNA937226_S_NODE_9105_length_251_cov_2.113861_g8978_i0 PRJNA937226 9105 251 2.113861 5.30579111 Betapolyomavirus macacae 1891767 Viruses Viruses 42.7 0.0406   NR AAK29054.1 1891767 g8978 i0 59.4 0.382470119521912 32 13 38.2 0 129 224 506 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 96 42.7 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;