RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA937226", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA937226 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13665540 13665540 PRJNA937226_S_NODE_8331_length_259_cov_1.238095_g8204_i0 PRJNA937226 8331 259 1.238095 3.20666605 Desulfosarcina alkanivorans 571177 Bacteria Bacteria 52.8 0.024   NTclustered gi|1773409569|dbj|AP021874.1| 571177 g8204 i0 100 0.108108108108108 28 0 11 0 91 118 6043594 6043567 Desulfosarcina alkanivorans PL12 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina alkanivorans
27182816 27182816 PRJNA937226_S_NODE_15482_length_206_cov_0.955414_g15355_i0 PRJNA937226 15482 206 0.955414 1.96815284 Desulfobacula phenolica 90732 Bacteria Bacteria 42 0.0259   NR WP_092236909.1 90732 g15355 i0 36.7 0.87378640776699 60 37 87.4 1 194 15 25 83 WP_092236909.1 Na+/H+ antiporter subunit E [Desulfobacula phenolica] diamond 180 42 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula phenolica
28730380 28730380 PRJNA937226_S_NODE_4107_length_327_cov_2.341727_g3980_i0 PRJNA937226 4107 327 2.341727 7.65744729 Desulfovibrio sp. 885 Bacteria Bacteria 157 4.67e-47   NR MBQ4124743.1 885 g3980 i0 81.7 0.853211009174312 93 16 84.4 1 2 277 42 134 MBQ4124743.1 hypothetical protein [Desulfovibrio sp.] diamond 279 157 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;