RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA937226" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA937226 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
911900 911900 PRJNA937226_S_NODE_18301_length_192_cov_4.986014_g18174_i0 PRJNA937226 18301 192 4.986014 9.57314688 Protostelium mycophagum 472931 Evosea other_Eukaryota 326 8.82e-85   NTclustered gi|290886111|gb|GU477647.1| 472931 g18174 i0 97.396 65.3958333333333 192 4 100 1 1 192 180 370 Protostelium mycophagum strain ATCC PRA-128 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 12556 326 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
17490185 17490185 PRJNA937226_S_NODE_19294_length_188_cov_2.791367_g19167_i0 PRJNA937226 19294 188 2.791367 5.24776996 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.016   NTclustered gi|470386054|ref|XM_004334128.1| 1257118 g19167 i0 100 0.148936170212766 28 0 15 0 131 158 133 160 Acanthamoeba castellanii str. Neff GATA zinc finger domain containing protein (ACA1_140790), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22933626 22933626 PRJNA937226_S_NODE_7258_length_271_cov_3.644144_g7131_i0 PRJNA937226 7258 271 3.644144 9.87563024 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 158 1.6299999999999996e-47   NR XP_004368153.1 1257118 g7131 i0 81.6 0.96309963099631 87 16 96.3 0 269 9 65 151 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 261 158 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28231906 28231906 PRJNA937226_S_NODE_16666_length_200_cov_1.847682_g16539_i0 PRJNA937226 16666 200 1.847682 3.695364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94 1.27e-22   NR XP_004258178.1 370355 g16539 i0 78.4 123.15 51 11 76.5 0 198 46 94 144 XP_004258178.1 40S ribosomal protein S15-4, putative [Entamoeba invadens IP1] diamond 24630 94 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;