RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA934472", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

  • Orthornavirae · 10 ✖

bioproject 1

  • PRJNA934472 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3807587 3807587 PRJNA934472_P_NODE_33483_length_257_cov_1.500000_g33105_i0 PRJNA934472 33483 257 1.5 3.855 root 1 Root_unresolved Root_unresolved 446 9.179999999999998e-121   NTclustered gi|1590853289|gb|MH595919.1| 12242 g33105 i0 98.047 99.295719844358 256 5 99 0 2 257 3106 2851 Tobacco mosaic virus isolate Harbin-1, complete genome blastn 25519 446 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
4739529 4739529 PRJNA934472_P_NODE_3524_length_719_cov_2.154799_g3235_i0 PRJNA934472 3524 719 2.154799 15.49300481 Tobamovirus tabaci 3432891 Viruses Viruses 1280 0   NTclustered gi|388240225|emb|HE818435.1| 12242 g3235 i0 98.748 99.923504867872 719 9 100 0 1 719 5569 6287 Tobacco mosaic virus isolate Ludian, complete genome blastn 71845 1280 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
7289224 7289224 PRJNA934472_P_NODE_32326_length_262_cov_1.253968_g31948_i0 PRJNA934472 32326 262 1.253968 3.28539616 Tobamovirus tabaci 3432891 Viruses Viruses 473 4.31e-129   NTclustered gi|1102971919|gb|KX650856.1| 12242 g31948 i0 99.237 99.9541984732824 262 2 100 0 1 262 3427 3166 Tobacco mosaic virus isolate Dzh-Qyg nonfunctional Replicase and nonfunctional movement protein genes, complete sequence blastn 26188 473 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
7289282 7289282 PRJNA934472_P_NODE_3486_length_722_cov_2.443760_g3197_i0 PRJNA934472 3486 722 2.44376 17.6439472 Tobamovirus tabaci 3432891 Viruses Viruses 1306 0   NTclustered gi|388240261|emb|HE818444.1| 12242 g3197 i0 99.307 100 722 5 100 0 1 722 4310 5031 Tobacco mosaic virus isolate Tianzhu-1, complete genome blastn 72200 1306 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
12734944 12734944 PRJNA934472_P_NODE_24170_length_298_cov_2.640000_g23792_i0 PRJNA934472 24170 298 2.64 7.8672 root 1 Root_unresolved Root_unresolved 523 4.879999999999998e-144   NTclustered gi|388240305|emb|HE818455.1| 12242 g23792 i0 98.322 100 298 5 100 0 1 298 2443 2146 Tobacco mosaic virus isolate Yihan-1, complete genome blastn 29800 523 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
15283533 15283533 PRJNA934472_P_NODE_7192_length_522_cov_3.209354_g6875_i0 PRJNA934472 7192 522 3.209354 16.75282788 Tobamovirus 12234 Viruses Viruses 953 0   NTclustered gi|388240149|emb|HE818416.1| 12242 g6875 i0 99.617 99.9674329501916 522 2 100 0 1 522 1641 2162 Tobacco mosaic virus isolate Fumeng, complete genome blastn 52183 953 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
20037874 20037874 PRJNA934472_P_NODE_36796_length_246_cov_2.236994_g36418_i0 PRJNA934472 36796 246 2.236994 5.50300524 Tobamovirus tabaci 3432891 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|1102971919|gb|KX650856.1| 12242 g36418 i0 100 99.9756097560976 246 0 100 0 1 246 461 706 Tobacco mosaic virus isolate Dzh-Qyg nonfunctional Replicase and nonfunctional movement protein genes, complete sequence blastn 24594 455 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
20381784 20381784 PRJNA934472_P_NODE_15436_length_365_cov_2.027397_g15059_i0 PRJNA934472 15436 365 2.027397 7.39999905 root 1 Root_unresolved Root_unresolved 658 0   NTclustered gi|388240149|emb|HE818416.1| 12242 g15059 i0 99.178 100 365 3 100 0 1 365 1160 1524 Tobacco mosaic virus isolate Fumeng, complete genome blastn 36500 658 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
22587762 22587762 PRJNA934472_P_NODE_15598_length_363_cov_9.627586_g15221_i0 PRJNA934472 15598 363 9.627586 34.94813718 Chrocomolt virus 3129476 Viruses Viruses 540 6.03e-149   NTclustered gi|2717317674|gb|PP171924.1| 3129476 g15221 i0 94.318 1.71900826446281 352 20 97 0 1 352 4049 4400 MAG: Chrocomolt virus isolate CC1B_k141_48525 genomic sequence blastn 624 540 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales     Chrocomolt virus
22588264 22588264 PRJNA934472_P_NODE_5118_length_607_cov_1.801498_g4808_i0 PRJNA934472 5118 607 1.801498 10.93509286 Tobamovirus tabaci 3432891 Viruses Viruses 1094 0   NTclustered gi|388240245|emb|HE818440.1| 12242 g4808 i0 99.176 100.00823723229 607 5 100 0 1 607 4326 3720 Tobacco mosaic virus isolate Shaoxing, complete genome blastn 60705 1094 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;