RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA934472" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA934472 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2186647 2186647 PRJNA934472_P_NODE_40002_length_228_cov_2.129032_g39624_i0 PRJNA934472 40002 228 2.129032 4.85419296 Leptotrichia wadei 157687 Bacteria Bacteria 416 6.259999999999998e-112   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g39624 i0 99.561 460.828947368421 228 1 100 0 1 228 1696142 1696369 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 105069 416 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
7289091 7289091 PRJNA934472_P_NODE_25426_length_292_cov_1.013699_g25048_i0 PRJNA934472 25426 292 1.013699 2.96000108 Fusobacterium polymorphum 76857 Bacteria Bacteria 540 4.74e-149   NTclustered gi|2706407748|gb|CP077116.1| 76857 g25048 i0 100 497.229452054795 292 0 100 0 1 292 563997 564288 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 145191 540 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
11459284 11459284 PRJNA934472_P_NODE_23949_length_300_cov_1.202643_g23571_i0 PRJNA934472 23949 300 1.202643 3.607929 Fusobacterium 848 Bacteria Bacteria 544 3.78e-150   NTclustered gi|1370537877|gb|CP028108.1| 860 g23571 i0 99.333 476.18 300 2 100 0 1 300 462295 462594 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 142854 549 0.990892531876138 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
12390400 12390400 PRJNA934472_P_NODE_38750_length_241_cov_1.595238_g38372_i0 PRJNA934472 38750 241 1.595238 3.84452358 Leptotrichia wadei 157687 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g38372 i0 100 425.717842323651 241 0 100 0 1 241 2298322 2298082 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 102598 446 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
20381898 20381898 PRJNA934472_P_NODE_37676_length_244_cov_1.573099_g37298_i0 PRJNA934472 37676 244 1.573099 3.83836156 Leptotrichia 32067 Bacteria Bacteria 435 1.87e-117   NTclustered gi|470484715|ref|NR_076664.1| 40542 g37298 i0 98.776 508.438524590164 245 2 100 1 1 244 2344 2100 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 124059 435 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
21313283 21313283 PRJNA934472_P_NODE_3717_length_700_cov_9.460925_g3424_i0 PRJNA934472 3717 700 9.460925 66.226475 Fusobacterium mortiferum 850 Bacteria Bacteria 1282 0   NTclustered gi|1370540179|gb|CP028102.1| 469616 g3424 i0 99.714 519.027142857143 700 2 100 0 1 700 104318 105017 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 363319 1282 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;