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contig_metadata

3 rows where bioproject = "PRJNA934472", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA934472 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6014327 6014327 PRJNA934472_P_NODE_3065_length_763_cov_3.926087_g2788_i0 PRJNA934472 3065 763 3.926087 29.95604381 uncultured delta proteobacterium 34034 Bacteria Bacteria 965 0   NTclustered gi|374854163|dbj|AP011765.1| 34034 g2788 i0 89.529 146.817824377457 764 77 100 3 1 763 12723 13484 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 112022 965 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
16214258 16214258 PRJNA934472_P_NODE_38673_length_241_cov_2.005952_g38295_i0 PRJNA934472 38673 241 2.005952 4.83434432 uncultured delta proteobacterium 34034 Bacteria Bacteria 211 3.38e-50   NTclustered gi|374854163|dbj|AP011765.1| 34034 g38295 i0 82.716 182.734439834025 243 37 100 4 1 241 15067 14828 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 44039 211 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
20381804 20381804 PRJNA934472_P_NODE_19996_length_325_cov_2.158730_g19619_i0 PRJNA934472 19996 325 2.15873 7.0158725 Bacteria 2 Bacteria Bacteria 595 1.1299999999999995e-165   NTclustered gi|365928063|gb|JN825513.1| 34034 g19619 i0 99.692 101.904615384615 325 1 100 0 1 325 1335 1011 Uncultured delta proteobacterium clone Alchichica_AQ2_2_1B_248 small subunit ribosomal RNA gene, partial sequence blastn 33119 601 0.990016638935108 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;