RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA934472" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA934472 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6359568 6359568 PRJNA934472_P_NODE_30065_length_271_cov_1.272727_g29687_i0 PRJNA934472 30065 271 1.272727 3.44909017 Chlamydomonadales 3042 Plants Plants 451 2.0999999999999997e-122   NTclustered gi|397124|emb|X68919.1| 28464 g29687 i0 96.679 131.726937269373 271 9 100 0 1 271 2248 2518 Chloroplast Chlamydomonas zebra rrnL gene, exon 1 blastn 35698 451 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas zebra
12390401 12390401 PRJNA934472_P_NODE_38770_length_241_cov_1.500000_g38392_i0 PRJNA934472 38770 241 1.5 3.615 Golenkinia longispicula 204992 Plants Plants 353 5.31e-93   NTclustered gi|952953743|gb|KT625111.1| 204992 g38392 i0 93.361 142.091286307054 241 12 99 3 1 240 4370 4607 Golenkinia longispicula clone contig295 chloroplast, partial genome blastn 34244 353 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Golenkiniaceae Golenkinia Golenkinia longispicula
12734898 12734898 PRJNA934472_P_NODE_1690_length_1017_cov_3.918432_g1463_i0 PRJNA934472 1690 1017 3.918432 39.85045344 root 1 Root_unresolved Root_unresolved 983 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g1463 i0 84.851 260.546705998033 1010 115 97 33 5 994 3591 2600 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 264976 985 0.997969543147208 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;