RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA934472", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA934472 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4739634 4739634 PRJNA934472_P_NODE_40604_length_196_cov_10.065041_g40226_i0 PRJNA934472 40604 196 10.065041 19.72748036 Goussia balatonica 947538 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.82e-5   NTclustered gi|324022100|gb|GU593717.1| 947538 g40226 i0 85.455 5.21428571428571 55 8 28 0 1 55 1503 1449 Goussia balatonica strain 608 28S ribosomal RNA gene, partial sequence blastn 1022 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Goussia Goussia balatonica
8564152 8564152 PRJNA934472_P_NODE_3567_length_715_cov_1.919003_g3277_i0 PRJNA934472 3567 715 1.919003 13.72087145 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 1079 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g3277 i0 98.371 1329.66153846154 614 10 86 0 102 715 1914 1301 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 950708 1079 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
23863605 23863605 PRJNA934472_P_NODE_40379_length_211_cov_2.297101_g40001_i0 PRJNA934472 40379 211 2.297101 4.84688311 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 350 5.869999999999999e-92   NTclustered gi|1624698156|ref|XM_029013946.1| 189622 g40001 i0 97.129 32.5734597156398 209 3 100 3 3 211 501 296 Babesia ovata CTP synthase, putative (BOVATA_050290), partial mRNA blastn 6873 350 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;