contig_metadata
8 rows where bioproject = "PRJNA934472", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 911087 | 911087 | PRJNA934472_P_NODE_30621_length_268_cov_2.953846_g30243_i0 | PRJNA934472 | 30621 | 268 | 2.953846 | 7.91630728 | Longimicrobiaceae bacterium | 3047548 | Bacteria | Bacteria | 138 | 2.939999999999999e-38 | NR | HET6763448.1 | 3047548 | g30243 | i0 | 79.8 | 1.99253731343284 | 89 | 18 | 99.6 | 0 | 1 | 267 | 125 | 213 | HET6763448.1 3-methyl-2-oxobutanoate hydroxymethyltransferase [Longimicrobiaceae bacterium] | diamond | 534 | 138 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobiaceae bacterium | ||
| 2186232 | 2186232 | PRJNA934472_P_NODE_20362_length_323_cov_0.948000_g19985_i0 | PRJNA934472 | 20362 | 323 | 0.948 | 3.06204 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 274 | 5.95e-69 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g19985 | i0 | 82.54 | 216.907120743034 | 315 | 51 | 97 | 4 | 3 | 314 | 3044434 | 3044747 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 70061 | 274 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 2186409 | 2186409 | PRJNA934472_P_NODE_28542_length_277_cov_1.470588_g28164_i0 | PRJNA934472 | 28542 | 277 | 1.470588 | 4.07352876 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 407 | 4.72e-109 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g28164 | i0 | 93.165 | 190.653429602888 | 278 | 17 | 100 | 2 | 1 | 277 | 172531 | 172255 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 52811 | 407 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 6014430 | 6014430 | PRJNA934472_P_NODE_35485_length_250_cov_1.536723_g35107_i0 | PRJNA934472 | 35485 | 250 | 1.536723 | 3.8418075 | Pseudogemmatithrix spongiicola | 3062599 | Bacteria | Bacteria | 372 | 1.53e-98 | NTclustered | gi|2557479348|gb|CP130613.1| | 3062599 | g35107 | i0 | 93.651 | 42.98 | 252 | 11 | 100 | 4 | 1 | 250 | 1552913 | 1552665 | Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome | blastn | 10745 | 372 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Pseudogemmatithrix | Pseudogemmatithrix spongiicola | |
| 7289337 | 7289337 | PRJNA934472_P_NODE_37586_length_244_cov_1.801170_g37208_i0 | PRJNA934472 | 37586 | 244 | 1.80117 | 4.3948548 | uncultured Gemmatimonadaceae bacterium | 246130 | Bacteria | Bacteria | 263 | 9.34e-66 | NTclustered | gi|2874253995|emb|OY970320.1| | 246130 | g37208 | i0 | 86.531 | 43.0409836065574 | 245 | 25 | 99 | 8 | 1 | 241 | 231285 | 231525 | MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 | blastn | 10502 | 263 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | uncultured Gemmatimonadaceae bacterium | ||
| 9838658 | 9838658 | PRJNA934472_P_NODE_10368_length_441_cov_2.000000_g9991_i0 | PRJNA934472 | 10368 | 441 | 2 | 8.82 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 577 | 5.689999999999998e-160 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g9991 | i0 | 90.293 | 316.648526077098 | 443 | 40 | 100 | 3 | 1 | 441 | 3043126 | 3043567 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 139642 | 577 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 18762878 | 18762878 | PRJNA934472_P_NODE_36815_length_246_cov_1.953757_g36437_i0 | PRJNA934472 | 36815 | 246 | 1.953757 | 4.80624222 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 257 | 4.39e-64 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g36437 | i0 | 85.83 | 1.00406504065041 | 247 | 30 | 99 | 5 | 2 | 246 | 602350 | 602593 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 247 | 257 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 25137142 | 25137142 | PRJNA934472_P_NODE_26520_length_286_cov_2.403756_g26142_i0 | PRJNA934472 | 26520 | 286 | 2.403756 | 6.87474216 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 322 | 1.82e-83 | NTclustered | gi|2874254107|emb|OY970192.1| | 412054 | g26142 | i0 | 88.489 | 287.111888111888 | 278 | 16 | 93 | 15 | 7 | 273 | 1594009 | 1593737 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 | blastn | 82114 | 322 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;