RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where bioproject = "PRJNA934472" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJNA934472 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
911279 911279 PRJNA934472_P_NODE_39481_length_234_cov_3.695652_g39103_i0 PRJNA934472 39481 234 3.695652 8.64782568 Cochliopodium minus 313997 Discosea other_Eukaryota 182 2.56e-41   NTclustered gi|330902862|gb|JF298257.1| 313997 g39103 i0 94.872 4.22649572649573 117 5 84 1 119 234 1765 1649 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 989 182 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
2186032 2186032 PRJNA934472_P_NODE_10502_length_438_cov_3.482192_g10125_i0 PRJNA934472 10502 438 3.482192 15.25200096 Cochliopodium minus 313997 Discosea other_Eukaryota 346 1.73e-90   NTclustered gi|330902862|gb|JF298257.1| 313997 g10125 i0 92.623 9.82876712328767 244 12 82 6 22 262 4 244 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 4305 346 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
3461671 3461671 PRJNA934472_P_NODE_16523_length_354_cov_6.309609_g16146_i0 PRJNA934472 16523 354 6.309609 22.33601586 Vannella septentrionalis 197531 Discosea other_Eukaryota 617 2.6299999999999995e-172   NTclustered gi|300078499|gb|GU001161.1| 197531 g16146 i0 98.039 54.1497175141243 357 4 100 1 1 354 2487 2843 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19169 617 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
3462164 3462164 PRJNA934472_P_NODE_40163_length_225_cov_6.618421_g39785_i0 PRJNA934472 40163 225 6.618421 14.89144725 Ripella sp. 805 1217113 Discosea other_Eukaryota 403 4.799999999999998e-108   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g39785 i0 99.111 100.471111111111 225 1 100 1 1 225 1324 1547 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 22606 403 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
4739060 4739060 PRJNA934472_P_NODE_13164_length_393_cov_7.609375_g12787_i0 PRJNA934472 13164 393 7.609375 29.90484375 Vannella septentrionalis 197531 Discosea other_Eukaryota 625 1.7699999999999996e-174   NTclustered gi|300078499|gb|GU001161.1| 197531 g12787 i0 95.42 1 393 17 100 1 1 393 1227 1618 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 393 625 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
4739631 4739631 PRJNA934472_P_NODE_40064_length_227_cov_2.487013_g39686_i0 PRJNA934472 40064 227 2.487013 5.64551951 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 337 4.9799999999999995e-88   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g39686 i0 93.534 37 232 6 100 6 1 227 277 50 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 8399 337 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
9839283 9839283 PRJNA934472_P_NODE_5988_length_566_cov_13.900609_g5676_i0 PRJNA934472 5988 566 13.900609 78.67744694 Tychosporium acutostipes 668358 Evosea other_Eukaryota 990 0   NTclustered gi|256550195|gb|FJ792703.1| 668358 g5676 i0 98.233 68.2332155477032 566 10 100 0 1 566 1800 1235 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 38620 990 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
12389887 12389887 PRJNA934472_P_NODE_12550_length_402_cov_30.337386_g12173_i0 PRJNA934472 12550 402 30.337386 121.95629172 Tychosporium acutostipes 668358 Evosea other_Eukaryota 636 8.359999999999997e-178   NTclustered gi|256550195|gb|FJ792703.1| 668358 g12173 i0 95.262 38.5970149253731 401 19 99 0 2 402 409 9 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 15516 636 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
14939061 14939061 PRJNA934472_P_NODE_33372_length_257_cov_4.994565_g32994_i0 PRJNA934472 33372 257 4.994565 12.83603205 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 287 5.890000000000001e-73   NTclustered gi|330902846|gb|JF298250.1| 703021 g32994 i0 87.452 10.8093385214008 263 15 99 12 3 257 273 21 Cochliopodium actinophorum clone 1201 18S ribosomal RNA gene, partial sequence blastn 2778 287 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
15283515 15283515 PRJNA934472_P_NODE_40592_length_197_cov_5.435484_g40214_i0 PRJNA934472 40592 197 5.435484 10.70790348 Ripella 1217112 Discosea other_Eukaryota 167 5.839999999999999e-37   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g40214 i0 100 86.4263959390863 90 0 81 0 105 194 314 225 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 17026 167 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
16214330 16214330 PRJNA934472_P_NODE_7133_length_524_cov_2.263858_g6817_i0 PRJNA934472 7133 524 2.263858 11.86261592 Heterostelium pallidum 13642 Evosea other_Eukaryota 110 3.01e-19   NTclustered gi|60117108|ref|NC_006862.1| 13642 g6817 i0 77.57 0.824427480916031 214 27 40 16 3 211 1692 1495 Polysphondylium pallidum mitochondrion, complete genome blastn 432 110 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
18762416 18762416 PRJNA934472_P_NODE_14395_length_377_cov_6.121711_g14018_i0 PRJNA934472 14395 377 6.121711 23.07885047 Vannella septentrionalis 197531 Discosea other_Eukaryota 634 2.799999999999999e-177   NTclustered gi|300078499|gb|GU001161.1| 197531 g14018 i0 97.082 1 377 10 100 1 1 377 1618 1243 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 377 634 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18762803 18762803 PRJNA934472_P_NODE_33375_length_257_cov_4.739130_g32997_i0 PRJNA934472 33375 257 4.73913 12.1795641 Vannella septentrionalis 197531 Discosea other_Eukaryota 420 5.56e-113   NTclustered gi|300078499|gb|GU001161.1| 197531 g32997 i0 96.109 33.2256809338521 257 10 100 0 1 257 4086 4342 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8539 420 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
21313330 21313330 PRJNA934472_P_NODE_38997_length_240_cov_3.281437_g38619_i0 PRJNA934472 38997 240 3.281437 7.8754488 Ripella sp. GP2 1217115 Discosea other_Eukaryota 383 6.74e-102   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g38619 i0 95.455 101.058333333333 242 7 100 3 1 240 577 816 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 24254 383 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
21657729 21657729 PRJNA934472_P_NODE_12657_length_401_cov_1.646341_g12280_i0 PRJNA934472 12657 401 1.646341 6.60182741 Didymium 5792 Evosea other_Eukaryota 379 1.55e-100   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g12280 i0 84.236 12.0473815461347 406 47 100 15 1 401 6951 7344 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4831 381 0.994750656167979 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
27126369 27126369 PRJNA934472_P_NODE_39362_length_236_cov_2.417178_g38984_i0 PRJNA934472 39362 236 2.417178 5.70454008 Dictyosteliaceae 2058185 Evosea other_Eukaryota 57.8 1.62e-7   NR KAF2076726.1 133409 g38984 i0 44.6 2.47881355932203 65 36 82.6 0 26 220 291 355 KAF2076726.1 hypothetical protein CYY_001983 [Polysphondylium violaceum] diamond 585 57.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31826436 31826436 PRJNA934472_P_NODE_34837_length_252_cov_1.536313_g34459_i0 PRJNA934472 34837 252 1.536313 3.87150876 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.4 5.03e-20   NR XP_004356634.1 1257118 g34459 i0 48.3 1.03571428571429 87 39 96.4 1 244 2 8 94 XP_004356634.1 uncharacterized protein ACA1_173920 [Acanthamoeba castellanii str. Neff] diamond 261 87.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32301573 32301573 PRJNA934472_P_NODE_31539_length_265_cov_1.296875_g31161_i0 PRJNA934472 31539 265 1.296875 3.43671875 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 82.4 4.58e-16   NR PRP76242.1 1890364 g31161 i0 56.9 0.815094339622642 72 28 81.5 1 50 265 27 95 PRP76242.1 putative aminotransferase [Planoprotostelium fungivorum] diamond 216 82.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;