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contig_metadata

23 rows where bioproject = "PRJNA934332" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934332 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
910643 910643 PRJNA934332_P_NODE_6541_length_268_cov_1.282051_g6454_i0 PRJNA934332 6541 268 1.282051 3.43589668 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 78.7 4.05e-10   NTclustered gi|2225500096|gb|CP095464.1| 2026799 g6454 i0 95.833 2.27238805970149 48 2 18 0 134 181 853476 853429 MAG: Verrucomicrobia bacterium isolate LL51 chromosome, complete genome blastn 609 78.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
9838624 9838624 PRJNA934332_P_NODE_7648_length_251_cov_0.865169_g7561_i0 PRJNA934332 7648 251 0.865169 2.17157419 Lacunisphaera sp. 1961806 Bacteria Bacteria 137 9.93e-39   NR MDI1250817.1 1961806 g7561 i0 82.7 3.83665338645418 75 13 89.6 0 22 246 1 75 MDI1250817.1 superoxide dismutase [Lacunisphaera sp.] diamond 963 137 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
14938543 14938543 PRJNA934332_P_NODE_7232_length_255_cov_1.692308_g7145_i0 PRJNA934332 7232 255 1.692308 4.3153854 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 145 2.38e-38   NR HXJ55024.1 2499141 g7145 i0 77.1 0.976470588235294 83 19 97.6 0 254 6 240 322 HXJ55024.1 DUF1549 and DUF1553 domain-containing protein [Verrucomicrobiia bacterium] diamond 249 145 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
17488924 17488924 PRJNA934332_P_NODE_7854_length_250_cov_0.870056_g7767_i0 PRJNA934332 7854 250 0.870056 2.17514 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 296 9.47e-76   NTclustered gi|2874253690|emb|OY969416.1| 412056 g7767 i0 88.048 26.208 251 28 100 2 1 250 1315177 1315426 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 6552 296 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18762310 18762310 PRJNA934332_P_NODE_7115_length_257_cov_1.695652_g7028_i0 PRJNA934332 7115 257 1.695652 4.35782564 Pedosphaera parvula 1032527 Bacteria Bacteria 337 5.759999999999998e-88   NTclustered gi|183579829|emb|AM905426.1| 320771 g7028 i0 90.272 9.94163424124514 257 25 100 0 1 257 846 1102 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 2555 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
20037294 20037294 PRJNA934332_P_NODE_8496_length_248_cov_1.760000_g8409_i0 PRJNA934332 8496 248 1.76 4.3648 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 165 1.17e-48   NR MDQ3624226.1 2026799 g8409 i0 93.9 1.98387096774194 82 5 99.2 0 246 1 196 277 MDQ3624226.1 RtcB family protein [Verrucomicrobiota bacterium] diamond 492 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
21312693 21312693 PRJNA934332_P_NODE_6177_length_274_cov_1.203980_g6090_i0 PRJNA934332 6177 274 1.20398 3.2989052 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 178 1.4e-54   NR HUS36062.1 2499141 g6090 i0 90.1 0.996350364963504 91 9 99.6 0 274 2 73 163 HUS36062.1 4Fe-4S dicluster domain-containing protein [Verrucomicrobiia bacterium] diamond 273 178 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
26771790 26771790 PRJNA934332_P_NODE_9161_length_247_cov_0.885057_g9074_i0 PRJNA934332 9161 247 0.885057 2.18609079 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 114 5.31e-28   NR MBI5693049.1 2026799 g9074 i0 72.9 0.850202429149798 70 19 85 0 37 246 20 89 MBI5693049.1 prolyl oligopeptidase family serine peptidase [Verrucomicrobiota bacterium] diamond 210 114 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27214440 27214440 PRJNA934332_P_NODE_9902_length_245_cov_0.895349_g9815_i0 PRJNA934332 9902 245 0.895349 2.19360505 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 56.6 5.08e-7   NR MCC7375888.1 2026801 g9815 i0 34.6 0.955102040816327 78 51 95.5 0 5 238 3203 3280 MCC7375888.1 lamin tail domain-containing protein [Verrucomicrobiales bacterium] diamond 234 56.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
27309643 27309643 PRJNA934332_P_NODE_5483_length_286_cov_1.394366_g5396_i0 PRJNA934332 5483 286 1.394366 3.98788676 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 58.2 1.13e-7   NR MBI5772962.1 2026799 g5396 i0 61 0.43006993006993 41 16 43 0 283 161 179 219 MBI5772962.1 TIGR00730 family Rossman fold protein [Verrucomicrobiota bacterium] diamond 123 58.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27341198 27341198 PRJNA934332_P_NODE_10643_length_243_cov_0.905882_g10556_i0 PRJNA934332 10643 243 0.905882 2.20129326 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 115 3.96e-29   NR HEV8541500.1 2499141 g10556 i0 68.8 0.987654320987654 80 25 98.8 0 241 2 46 125 HEV8541500.1 GDSL-type esterase/lipase family protein [Verrucomicrobiia bacterium] diamond 240 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27657011 27657011 PRJNA934332_P_NODE_6444_length_270_cov_0.939086_g6357_i0 PRJNA934332 6444 270 0.939086 2.5355322 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 80.9 2.76e-16   NR HVY71846.1 2499141 g6357 i0 56 1.01111111111111 91 35 98.9 2 3 269 52 139 HVY71846.1 LysM domain-containing protein [Verrucomicrobiia bacterium] diamond 273 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28453350 28453350 PRJNA934332_P_NODE_9706_length_245_cov_0.895349_g9619_i0 PRJNA934332 9706 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 63.2 2.49e-9   NR MCI0535047.1 2026801 g9619 i0 56 2.41224489795918 50 21 60 1 245 99 1697 1746 MCI0535047.1 Ig-like domain-containing protein [Verrucomicrobiales bacterium] diamond 591 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28800290 28800290 PRJNA934332_P_NODE_11247_length_241_cov_0.916667_g11160_i0 PRJNA934332 11247 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 47 0.00113   NR WP_265595598.1 1403819 g11160 i0 39 1.56846473029046 59 36 73.4 0 216 40 188 246 WP_265595598.1 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein [Verrucomicrobium sp. BvORR106] diamond 378 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. BvORR106
28824791 28824791 PRJNA934332_P_NODE_6468_length_269_cov_1.571429_g6381_i0 PRJNA934332 6468 269 1.571429 4.22714401 Opitutia bacterium 2026771 Bacteria Bacteria 42.7 0.0451   NR MBT6958160.1 2026771 g6381 i0 35.8 0.591078066914498 53 34 59.1 0 2 160 153 205 MBT6958160.1 hypothetical protein [Opitutia bacterium] diamond 159 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
28919618 28919618 PRJNA934332_P_NODE_10788_length_242_cov_0.911243_g10701_i0 PRJNA934332 10788 242 0.911243 2.20520806 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 159 4.789999999999999e-46   NR MEI6465726.1 2026799 g10701 i0 91.3 0.991735537190083 80 7 99.2 0 241 2 243 322 MEI6465726.1 inositol monophosphatase [Verrucomicrobiota bacterium] diamond 240 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28958609 28958609 PRJNA934332_P_NODE_7548_length_251_cov_0.865169_g7461_i0 PRJNA934332 7548 251 0.865169 2.17157419 Pseudomonadati 3379134 Bacteria Bacteria 122 2.5899999999999997e-31   NR HOB32286.1 2026799 g7461 i0 72 4.9003984063745 82 23 98 0 5 250 69 150 HOB32286.1 zinc-binding dehydrogenase [Verrucomicrobiota bacterium] diamond 1230 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29014824 29014824 PRJNA934332_P_NODE_10608_length_243_cov_0.905882_g10521_i0 PRJNA934332 10608 243 0.905882 2.20129326 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 153 1.22e-43   NR MES2571320.1 2026799 g10521 i0 95 0.987654320987654 80 4 98.8 0 241 2 117 196 MES2571320.1 YncE family protein [Verrucomicrobiota bacterium] diamond 240 153 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29361867 29361867 PRJNA934332_P_NODE_11489_length_229_cov_2.955128_g11402_i0 PRJNA934332 11489 229 2.955128 6.76724312 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 92.8 3.75e-22   NR HVY69913.1 2499141 g11402 i0 78.8 0.681222707423581 52 11 68.1 0 157 2 1 52 HVY69913.1 BlaI/MecI/CopY family transcriptional regulator [Verrucomicrobiia bacterium] diamond 156 92.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30404551 30404551 PRJNA934332_P_NODE_11513_length_226_cov_2.013072_g11426_i0 PRJNA934332 11513 226 2.013072 4.54954272 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52.8 8.51e-6   NR MCL4176897.1 2026799 g11426 i0 47.5 7.04867256637168 59 29 75.7 1 173 3 75 133 MCL4176897.1 flotillin family protein [Verrucomicrobiota bacterium] diamond 1593 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30695437 30695437 PRJNA934332_P_NODE_8853_length_248_cov_0.880000_g8766_i0 PRJNA934332 8853 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 124 1.16e-31   NR PAW70934.1 1982322 g8766 i0 86.8 1.64516129032258 68 9 82.3 0 205 2 1 68 PAW70934.1 MAG: hypothetical protein B9S35_14195 [Opitutia bacterium Tous-C5TDCM] diamond 408 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium Tous-C5TDCM
31573734 31573734 PRJNA934332_P_NODE_5736_length_282_cov_1.138756_g5649_i0 PRJNA934332 5736 282 1.138756 3.21129192 Prosthecobacter sp. 1965333 Bacteria Bacteria 137 1.02e-36   NR MDB6003364.1 1965333 g5649 i0 90 0.851063829787234 80 7 85.1 1 42 281 4 82 MDB6003364.1 hypothetical protein [Prosthecobacter sp.] diamond 240 137 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
32403227 32403227 PRJNA934332_P_NODE_6799_length_263_cov_1.621053_g6712_i0 PRJNA934332 6799 263 1.621053 4.26336939 Pedosphaera 1032526 Bacteria Bacteria 113 7.89e-27   NR MDB6022549.1 2024890 g6712 i0 67.8 1.98479087452471 87 28 99.2 0 263 3 322 408 MDB6022549.1 hypothetical protein [Pedosphaera sp.] diamond 522 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;