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contig_metadata

15 rows where bioproject = "PRJNA934332" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA934332 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2185936 2185936 PRJNA934332_P_NODE_2762_length_379_cov_1.627451_g2675_i0 PRJNA934332 2762 379 1.627451 6.16803929 Pristionchus sp. 6 RS5101 358043 Nematoda Nematoda 228 5.589999999999998e-55   NTclustered gi|150982243|gb|EF634710.1| 358043 g2675 i0 83.333 41.3693931398417 252 36 66 5 130 378 303 55 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 15679 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
12734847 12734847 PRJNA934332_P_NODE_4010_length_326_cov_2.624506_g3923_i0 PRJNA934332 4010 326 2.624506 8.55588956 Steinernema hermaphroditum 289476 Nematoda Nematoda 135 3.89e-34   NR KAK0412541.1 289476 g3923 i0 66.7 3.60736196319018 99 33 91.1 0 298 2 708 806 KAK0412541.1 hypothetical protein QR680_006270 [Steinernema hermaphroditum] diamond 1176 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
26778881 26778881 PRJNA934332_P_NODE_10361_length_243_cov_1.358824_g10274_i0 PRJNA934332 10361 243 1.358824 3.30194232 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 2.32e-29   NR ACZ13327.1 6326 g10274 i0 74 5.76543209876543 77 20 95.1 0 231 1 51 127 ACZ13327.1 60S ribosomal protein L7 [Bursaphelenchus xylophilus] diamond 1401 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
27189908 27189908 PRJNA934332_P_NODE_8702_length_248_cov_0.880000_g8615_i0 PRJNA934332 8702 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 64.7 7.12e-10   NR GMS81058.1 358040 g8615 i0 35.2 7.04032258064516 88 48 95.6 2 3 239 298 385 GMS81058.1 hypothetical protein PENTCL1PPCAC_3233, partial [Pristionchus entomophagus] diamond 1746 64.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
28541131 28541131 PRJNA934332_P_NODE_10147_length_244_cov_0.900585_g10060_i0 PRJNA934332 10147 244 0.900585 2.1974274 Meloidogyne enterolobii 390850 Nematoda Nematoda 64.3 9.62e-10   NR CAD2172123.1 390850 g10060 i0 38.1 1.0327868852459 84 45 94.7 1 10 240 419 502 CAD2172123.1 unnamed protein product [Meloidogyne enterolobii] diamond 252 64.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
28642822 28642822 PRJNA934332_P_NODE_6467_length_269_cov_1.571429_g6380_i0 PRJNA934332 6467 269 1.571429 4.22714401 Rhabditida 6236 Nematoda Nematoda 97.4 5.31e-24   NR ABN49241.1 34506 g6380 i0 57 4.817843866171 86 36 94.8 1 13 267 1 86 ABN49241.1 chaperonin 10 [Strongyloides ratti] diamond 1296 97.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
28888129 28888129 PRJNA934332_P_NODE_6908_length_261_cov_1.622340_g6821_i0 PRJNA934332 6908 261 1.62234 4.2343074 Strongylus vulgaris 40348 Nematoda Nematoda 88.2 3.4e-19   NR VDM78559.1 40348 g6821 i0 65.4 1.74712643678161 52 18 59.8 0 260 105 171 222 VDM78559.1 unnamed protein product [Strongylus vulgaris] diamond 456 88.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
29014825 29014825 PRJNA934332_P_NODE_2628_length_386_cov_1.476038_g2541_i0 PRJNA934332 2628 386 1.476038 5.69750668 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 77.4 7.39e-14   NR CAD5226920.1 6326 g2541 i0 39.8 0.955958549222798 123 70 93.3 2 20 379 11 132 CAD5226920.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 369 77.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
29109383 29109383 PRJNA934332_P_NODE_2788_length_378_cov_1.009836_g2701_i0 PRJNA934332 2788 378 1.009836 3.81718008 Trichuris suis 68888 Nematoda Nematoda 109 8.79e-26   NR KFD57259.1 68888 g2701 i0 49 0.825396825396825 104 51 81 1 71 376 38 141 KFD57259.1 hypothetical protein M513_01770 [Trichuris suis] diamond 312 109 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29109384 29109384 PRJNA934332_P_NODE_3748_length_336_cov_1.171103_g3661_i0 PRJNA934332 3748 336 1.171103 3.93490608 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 138 3.74e-37   NR CAD5212124.1 6326 g3661 i0 54.1 0.973214285714286 109 49 96.4 1 12 335 222 330 CAD5212124.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 327 138 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
29116395 29116395 PRJNA934332_P_NODE_7408_length_252_cov_1.290503_g7321_i0 PRJNA934332 7408 252 1.290503 3.25206756 Rhabditida 6236 Nematoda Nematoda 43.5 0.0185   NR VDM78544.1 40348 g7321 i0 48.6 1.66666666666667 35 18 41.7 0 3 107 40 74 VDM78544.1 unnamed protein product [Strongylus vulgaris] diamond 420 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
31612249 31612249 PRJNA934332_P_NODE_4836_length_301_cov_1.350877_g4749_i0 PRJNA934332 4836 301 1.350877 4.06613977 Rhabditida 6236 Nematoda Nematoda 96.3 2.08e-21   NR VDO70226.1 6339 g4749 i0 58.1 4.41528239202658 74 31 73.8 0 222 1 44 117 VDO70226.1 unnamed protein product [Heligmosomoides polygyrus] diamond 1329 96.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
31833445 31833445 PRJNA934332_P_NODE_6017_length_277_cov_1.132353_g5930_i0 PRJNA934332 6017 277 1.132353 3.13661781 Rhabditida 6236 Nematoda Nematoda 92.4 6.89e-20   NR NP_001369965.1 6239 g5930 i0 78.7 5.14440433212996 47 10 50.9 0 276 136 299 345 NP_001369965.1 Peptidase C1A papain C-terminal domain-containing protein [Caenorhabditis elegans] diamond 1425 92.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
32181778 32181778 PRJNA934332_P_NODE_6758_length_264_cov_1.308901_g6671_i0 PRJNA934332 6758 264 1.308901 3.45549864 Opisthokonta 33154 Nematoda Nematoda 49.3 2.3e-4   NR CAD5232653.1 6326 g6671 i0 35.4 5.81818181818182 99 49 98.9 3 3 263 13 108 CAD5232653.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1536 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32687220 32687220 PRJNA934332_P_NODE_7460_length_251_cov_1.432584_g7373_i0 PRJNA934332 7460 251 1.432584 3.59578584 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 123 1.2199999999999999e-32   NR CAJ0579848.1 96644 g7373 i0 69.9 10.9123505976096 83 25 99.2 0 250 2 157 239 CAJ0579848.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 2739 123 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;