RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA934332" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934332 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1255423 1255423 PRJNA934332_P_NODE_2121_length_423_cov_5.517143_g2034_i0 PRJNA934332 2121 423 5.517143 23.33751489 Mollicutes 31969 Bacteria Bacteria 782 0   NTclustered gi|281186773|gb|GU227378.1| 2100 g2034 i0 100 102.912529550827 423 0 100 0 1 423 1357 935 Mycoplasma hyorhinis strain USP36P 16S ribosomal RNA gene, partial sequence blastn 43532 782 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
8908207 8908207 PRJNA934332_P_NODE_2767_length_379_cov_1.323529_g2680_i0 PRJNA934332 2767 379 1.323529 5.01617491 Mycoplasma 2093 Bacteria Bacteria 695 0   NTclustered gi|2294785939|gb|CP103424.1| 51364 g2680 i0 99.736 194.002638522427 379 1 100 0 1 379 270319 269941 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 73527 695 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
23862986 23862986 PRJNA934332_P_NODE_6659_length_266_cov_1.196891_g6572_i0 PRJNA934332 6659 266 1.196891 3.18373006 Metamycoplasma orale 2121 Bacteria Bacteria 481 2.62e-131   NTclustered gi|1563679895|emb|LR214940.1| 2121 g6572 i0 99.248 151.274436090226 266 2 100 0 1 266 698680 698415 Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 blastn 40239 481 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;