RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA934332", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 20 ✖

tax_phylum 1

  • Acidobacteriota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA934332 · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10184099 10184099 PRJNA934332_P_NODE_10848_length_242_cov_0.911243_g10761_i0 PRJNA934332 10848 242 0.911243 2.20520806 Terriglobia 204432 Bacteria Bacteria 145 2.86e-39   NR MDX1984977.1 2212468 g10761 i0 83.5 8.81404958677686 79 13 97.9 0 237 1 286 364 MDX1984977.1 alpha-L-fucosidase [Bryobacteraceae bacterium] diamond 2133 145 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
11114222 11114222 PRJNA934332_P_NODE_10989_length_242_cov_0.911243_g10902_i0 PRJNA934332 10989 242 0.911243 2.20520806 Candidatus Solibacter usitatus 332163 Bacteria Bacteria 291 4.24e-74   NTclustered gi|470468228|ref|NR_076103.1| 332163 g10902 i0 88.571 109.995867768595 245 21 100 7 1 242 2275 2035 Candidatus Solibacter usitatus strain Ellin6076 23S ribosomal RNA gene, complete sequence blastn 26619 291 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus
14938513 14938513 PRJNA934332_P_NODE_3172_length_358_cov_1.322807_g3085_i0 PRJNA934332 3172 358 1.322807 4.73564906 Pseudomonadati 3379134 Bacteria Bacteria 121 1.87e-31   NR WP_263414003.1 940139 g3085 i0 72.1 6.15921787709497 86 23 72.1 1 3 260 157 241 WP_263414003.1 SDR family NAD(P)-dependent oxidoreductase [Terriglobus aquaticus] diamond 2205 122 0.991803278688525 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus aquaticus
17832989 17832989 PRJNA934332_P_NODE_9214_length_247_cov_0.885057_g9127_i0 PRJNA934332 9214 247 0.885057 2.18609079 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 138 5.38e-36   NR MEO5923947.1 2212468 g9127 i0 84 1.96761133603239 81 13 98.4 0 3 245 224 304 MEO5923947.1 ferrous iron transporter B [Bryobacteraceae bacterium] diamond 486 138 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
26676440 26676440 PRJNA934332_P_NODE_11061_length_241_cov_1.833333_g10974_i0 PRJNA934332 11061 241 1.833333 4.41833253 Acidobacteriota bacterium 1978231 Bacteria Bacteria 71.2 2.69e-12   NR MEO8037012.1 1978231 g10974 i0 63.2 0.70954356846473 57 21 71 0 233 63 318 374 MEO8037012.1 metallophosphoesterase [Acidobacteriota bacterium] diamond 171 71.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27150953 27150953 PRJNA934332_P_NODE_7662_length_251_cov_0.865169_g7575_i0 PRJNA934332 7662 251 0.865169 2.17157419 Candidatus Geothrix skivensis 2954439 Bacteria Bacteria 109 1.83e-26   NR MBK9796358.1 2954439 g7575 i0 66.3 0.956175298804781 80 27 95.6 0 3 242 5 84 MBK9796358.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Candidatus Geothrix skivensis] diamond 240 109 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Candidatus Geothrix skivensis
27309644 27309644 PRJNA934332_P_NODE_5823_length_280_cov_1.371981_g5736_i0 PRJNA934332 5823 280 1.371981 3.8415468 Acidobacteriota bacterium 1978231 Bacteria Bacteria 136 1.52e-36   NR MCX6622778.1 1978231 g5736 i0 66.3 0.985714285714286 92 31 98.6 0 276 1 212 303 MCX6622778.1 PfkB family carbohydrate kinase [Acidobacteriota bacterium] diamond 276 136 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28098784 28098784 PRJNA934332_P_NODE_8485_length_248_cov_2.622857_g8398_i0 PRJNA934332 8485 248 2.622857 6.50468536 Acidobacteriota bacterium 1978231 Bacteria Bacteria 153 3.989999999999999e-41   NR MFM2125432.1 1978231 g8398 i0 85.4 0.991935483870968 82 12 99.2 0 2 247 142 223 MFM2125432.1 hypothetical protein [Acidobacteriota bacterium] diamond 246 153 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29614086 29614086 PRJNA934332_P_NODE_10770_length_242_cov_0.911243_g10683_i0 PRJNA934332 10770 242 0.911243 2.20520806 Acidobacteriota bacterium 1978231 Bacteria Bacteria 163 3.39e-45   NR MBM3793666.1 1978231 g10683 i0 95 0.991735537190083 80 4 99.2 0 241 2 525 604 MBM3793666.1 DUF1592 domain-containing protein [Acidobacteriota bacterium] diamond 240 163 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29645569 29645569 PRJNA934332_P_NODE_7750_length_251_cov_0.865169_g7663_i0 PRJNA934332 7750 251 0.865169 2.17157419 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 56.2 6.96e-7   NR BDC48658.1 2802972 g7663 i0 85.2 1.31474103585657 27 4 32.3 0 251 171 373 399 BDC48658.1 alpha/beta hydrolase [Bryobacterales bacterium F-183] diamond 330 56.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
30025152 30025152 PRJNA934332_P_NODE_7651_length_251_cov_0.865169_g7564_i0 PRJNA934332 7651 251 0.865169 2.17157419 Acidobacteriota bacterium 1978231 Bacteria Bacteria 176 1.41e-52   NR MEI9813295.1 1978231 g7564 i0 91.6 0.99203187250996006 83 7 99.2 0 1 249 226 308 MEI9813295.1 PQQ-dependent sugar dehydrogenase [Acidobacteriota bacterium] diamond 249 176 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30158153 30158153 PRJNA934332_P_NODE_10992_length_242_cov_0.911243_g10905_i0 PRJNA934332 10992 242 0.911243 2.20520806 Pseudomonadati 3379134 Bacteria Bacteria 120 5.27e-30   NR HZY61483.1 1934404 g10905 i0 65.8 17.1074380165289 79 27 97.9 0 6 242 161 239 HZY61483.1 glycosyl hydrolase family 39 [Edaphobacter sp.] diamond 4140 121 0.991735537190083 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter sp.
30498953 30498953 PRJNA934332_P_NODE_8993_length_247_cov_0.885057_g8906_i0 PRJNA934332 8993 247 0.885057 2.18609079 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 68.6 3.23e-11   NR MFN7919901.1 2212468 g8906 i0 45.9 0.898785425101215 74 40 89.9 0 222 1 590 663 MFN7919901.1 hypothetical protein [Bryobacteraceae bacterium] diamond 222 68.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
30530407 30530407 PRJNA934332_P_NODE_6473_length_269_cov_1.408163_g6386_i0 PRJNA934332 6473 269 1.408163 3.78795847 Bryobacterales bacterium 2026791 Bacteria Bacteria 127 6.45e-32   NR MCU1329754.1 2026791 g6386 i0 77.5 0.992565055762082 89 20 99.3 0 267 1 373 461 MCU1329754.1 hypothetical protein [Bryobacterales bacterium] diamond 267 127 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
30593587 30593587 PRJNA934332_P_NODE_5493_length_286_cov_1.267606_g5406_i0 PRJNA934332 5493 286 1.267606 3.62535316 Blastocatellia bacterium 2052146 Bacteria Bacteria 102 1.2e-23   NR HKQ76392.1 2052146 g5406 i0 54.4 0.944055944055944 90 36 94.4 1 285 16 47 131 HKQ76392.1 STELLO glycosyltransferase family protein [Blastocatellia bacterium] diamond 270 102 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
30688348 30688348 PRJNA934332_P_NODE_11453_length_235_cov_2.166667_g11366_i0 PRJNA934332 11453 235 2.166667 5.09166745 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 124 4.92e-31   NR HUR35195.1 2910147 g11366 i0 81.6 1.9531914893617 76 14 97 0 6 233 148 223 HUR35195.1 glycosyltransferase family 39 protein [Vicinamibacterales bacterium] diamond 459 124 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
30751761 30751761 PRJNA934332_P_NODE_7954_length_250_cov_0.870056_g7867_i0 PRJNA934332 7954 250 0.870056 2.17514 Acidobacteriota bacterium 1978231 Bacteria Bacteria 100 3.84e-24   NR MBI4903934.1 1978231 g7867 i0 68.6 1.68 70 22 84 0 1 210 142 211 MBI4903934.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Acidobacteriota bacterium] diamond 420 100 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31700087 31700087 PRJNA934332_P_NODE_5597_length_284_cov_1.440758_g5510_i0 PRJNA934332 5597 284 1.440758 4.09175272 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 68.2 6.99e-11   NR HEY3161421.1 2910147 g5510 i0 47 0.876760563380282 83 42 87.7 1 255 7 684 764 HEY3161421.1 Ig-like domain repeat protein [Vicinamibacterales bacterium] diamond 249 68.2 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31763312 31763312 PRJNA934332_P_NODE_7557_length_251_cov_0.865169_g7470_i0 PRJNA934332 7557 251 0.865169 2.17157419 Terriglobia bacterium 2081523 Bacteria Bacteria 132 6.91e-35   NR NDJ14590.1 2081523 g7470 i0 80.7 0.99203187250996006 83 16 99.2 0 250 2 167 249 NDJ14590.1 arsenical pump-driving ATPase [Terriglobia bacterium] diamond 249 132 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
32522976 32522976 PRJNA934332_P_NODE_9259_length_246_cov_1.456647_g9172_i0 PRJNA934332 9259 246 1.456647 3.58335162 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 60.1 2.83e-8   NR MBP7678692.1 2651171 g9172 i0 45.8 1.01219512195122 83 34 98.8 2 244 2 81 154 MBP7678692.1 AAA family ATPase [Thermoanaerobaculia bacterium] diamond 249 60.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;