RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA934332", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA934332 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27530516 27530516 PRJNA934332_P_NODE_6903_length_261_cov_1.638298_g6816_i0 PRJNA934332 6903 261 1.638298 4.27595778 Geomonas limicola 2740186 Bacteria Bacteria 62 2.76e-9   NR WP_183359663.1 2740186 g6816 i0 44.1 1.60919540229885 68 35 78.2 1 6 209 89 153 WP_183359663.1 CAP domain-containing protein [Geomonas limicola] diamond 420 62 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas limicola
27941078 27941078 PRJNA934332_P_NODE_4525_length_310_cov_1.299578_g4438_i0 PRJNA934332 4525 310 1.299578 4.0286918 Desulfosarcina alkanivorans 571177 Bacteria Bacteria 55.5 2.88e-6   NR WP_155319901.1 571177 g4438 i0 37.8 3.96774193548387 82 47 79.4 2 9 254 927 1004 WP_155319901.1 Ig-like domain-containing protein [Desulfosarcina alkanivorans] diamond 1230 55.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina alkanivorans
30032096 30032096 PRJNA934332_P_NODE_8291_length_249_cov_0.875000_g8204_i0 PRJNA934332 8291 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 55.5 1.12e-6   NR WP_245695181.1 91360 g8204 i0 47.1 1.21686746987952 51 27 61.4 0 236 84 242 292 WP_245695181.1 N-carbamoylputrescine amidase [Desulforhopalus singaporensis] diamond 303 55.8 0.99462365591397806 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus Desulforhopalus singaporensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;