RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA934332", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA934332 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31162129 31162129 PRJNA934332_P_NODE_9415_length_246_cov_0.890173_g9328_i0 PRJNA934332 9415 246 0.890173 2.18982558 Helicobacter pylori 210 Bacteria Bacteria 40.8 0.0234   NR GAA8930966.1 210 g9328 i0 48.6 0.426829268292683 35 15 39 1 171 76 11 45 GAA8930966.1 hypothetical protein Kyoto166A_4300 [Helicobacter pylori] diamond 105 40.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31510457 31510457 PRJNA934332_P_NODE_9196_length_247_cov_0.885057_g9109_i0 PRJNA934332 9196 247 0.885057 2.18609079 Helicobacter pylori 210 Bacteria Bacteria 78.2 3.09e-15   NR GAA6795622.1 210 g9109 i0 54.7 1.40890688259109 64 28 76.5 1 221 33 79 142 GAA6795622.1 hypothetical protein Kyoto200A_0460 [Helicobacter pylori] diamond 348 78.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;