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contig_metadata

34 rows where bioproject = "PRJNA934332", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 34 ✖

tax_clade 1

  • Sar · 34 ✖

bioproject 1

  • PRJNA934332 · 34 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2185947 2185947 PRJNA934332_P_NODE_4002_length_327_cov_0.976378_g3915_i0 PRJNA934332 4002 327 0.976378 3.19275606 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 166 2.22e-50   NR TMW62875.1 41045 g3915 i0 74.1 12.8532110091743 108 28 99.1 0 4 327 3 110 TMW62875.1 hypothetical protein Poli38472_005493 [Pythium oligandrum] diamond 4203 166 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
3461467 3461467 PRJNA934332_P_NODE_10583_length_243_cov_0.905882_g10496_i0 PRJNA934332 10583 243 0.905882 2.20129326 Plectospira myriandra 100863 SAR_Eukaryotes SAR_Eukaryotes 182 2.68e-41   NTclustered gi|57903345|gb|AY729823.1| 100863 g10496 i0 82.297 86.1069958847737 209 37 86 0 13 221 694 902 Plectospira myriandra beta-tubulin gene, partial cds blastn 20924 182 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Plectospira Plectospira myriandra
3807474 3807474 PRJNA934332_P_NODE_9483_length_246_cov_0.890173_g9396_i0 PRJNA934332 9483 246 0.890173 2.18982558 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 163 9.84e-36   NTclustered gi|2795045662|ref|XM_067939157.1| 4785 g9396 i0 92.174 38.6666666666667 115 9 47 0 132 246 23 137 Phytophthora cinnamomi ribonucleoprotein-associated protein (IUM83_14412), partial mRNA blastn 9512 163 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6013877 6013877 PRJNA934332_P_NODE_6865_length_262_cov_1.322751_g6778_i0 PRJNA934332 6865 262 1.322751 3.46560762 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 172 1.76e-38   NTclustered gi|675199790|ref|XM_008910532.1| 761204 g6778 i0 82.653 0.748091603053435 196 32 74 2 2 196 1081 1275 Phytophthora parasitica INRA-310 T-complex protein 1, epsilon subunit mRNA blastn 196 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
7288692 7288692 PRJNA934332_P_NODE_10066_length_244_cov_0.900585_g9979_i0 PRJNA934332 10066 244 0.900585 2.1974274 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 165 2.71e-36   NTclustered gi|2795040748|ref|XM_067932530.1| 4785 g9979 i0 79.654 10.4139344262295 231 45 94 2 1 230 2 231 Phytophthora cinnamomi ABC transporter E family member 2 (IUM83_08175), partial mRNA blastn 2541 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7633545 7633545 PRJNA934332_P_NODE_11446_length_236_cov_2.361963_g11359_i0 PRJNA934332 11446 236 2.361963 5.57423268 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 139 1.58e-28   NTclustered gi|23394393|gb|AF424661.1| 4787 g11359 i0 83.553 2.8135593220339 152 21 64 4 48 197 139 288 Phytophthora infestans clone MY-10-D-12 cystathionine beta-synthase mRNA, complete cds blastn 664 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
9838582 9838582 PRJNA934332_P_NODE_2208_length_416_cov_2.402332_g2121_i0 PRJNA934332 2208 416 2.402332 9.99370112 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 237 1.03e-57   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g2121 i0 77.358 26.3581730769231 424 81 99 15 1 415 654 237 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 10965 237 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12734854 12734854 PRJNA934332_P_NODE_750_length_693_cov_2.129032_g670_i0 PRJNA934332 750 693 2.129032 14.75419176 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 326 3.69e-84   NTclustered gi|156987613|gb|EU079765.1| 67594 g670 i0 78.302 62.8917748917749 530 94 75 16 124 641 821 301 Phytophthora syringae isolate PD_00013(P10332) translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 43584 326 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora syringae
13664259 13664259 PRJNA934332_P_NODE_9611_length_246_cov_0.867052_g9524_i0 PRJNA934332 9611 246 0.867052 2.13294792 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 73.9 1.94e-14   NR KAG9399474.1 112091 g9524 i0 79.1 1.08536585365854 43 8 52.4 1 245 117 52 93 KAG9399474.1 60S ribosomal protein L18A [Aphanomyces cochlioides] diamond 267 73.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
14938503 14938503 PRJNA934332_P_NODE_2232_length_414_cov_1.193548_g2145_i0 PRJNA934332 2232 414 1.193548 4.94128872 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 174 1.48e-50   NR TMW61715.1 41045 g2145 i0 58 8.96376811594203 138 56 99.3 2 412 2 29 165 TMW61715.1 hypothetical protein Poli38472_010778 [Pythium oligandrum] diamond 3711 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
14938520 14938520 PRJNA934332_P_NODE_4312_length_317_cov_0.946721_g4225_i0 PRJNA934332 4312 317 0.946721 3.00110557 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 165 3.66e-36   NTclustered gi|2794920874|ref|XM_067880626.1| 164328 g4225 i0 78.439 85.3186119873817 269 46 84 10 48 313 1257 998 Phytophthora ramorum Adenosylhomocysteinase (KRP23_10205), partial mRNA blastn 27046 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
18762292 18762292 PRJNA934332_P_NODE_4515_length_310_cov_2.379747_g4428_i0 PRJNA934332 4515 310 2.379747 7.3772157 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 156 1.1999999999999999e-41   NR RHY63942.1 112090 g4428 i0 74.5 76.8483870967742 106 24 99.7 2 310 2 356 461 RHY63942.1 hypothetical protein DYB30_004637 [Aphanomyces astaci] diamond 23823 157 0.993630573248408 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
21312661 21312661 PRJNA934332_P_NODE_1377_length_517_cov_1.270270_g1292_i0 PRJNA934332 1377 517 1.27027 6.5672959 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 162 3.44e-46   NR KAL0584308.1 65357 g1292 i0 62 5.58220502901354 137 51 79.5 1 2 412 126 261 KAL0584308.1 hypothetical protein ABG067_005809 [Albugo candida] diamond 2886 162 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
21312673 21312673 PRJNA934332_P_NODE_3217_length_355_cov_2.528369_g3130_i0 PRJNA934332 3217 355 2.528369 8.97570995 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 143 1.86e-38   NR KAF0738261.1 100861 g3130 i0 64.1 3.93802816901408 117 40 98.9 1 353 3 246 360 KAF0738261.1 hypothetical protein Ae201684_005821 [Aphanomyces euteiches] diamond 1398 143 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22587575 22587575 PRJNA934332_P_NODE_2018_length_432_cov_1.175487_g1931_i0 PRJNA934332 2018 432 1.175487 5.07810384 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 291 8.12e-74   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g1931 i0 79.446 24.9930555555556 433 72 98 16 2 424 207 632 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 10797 291 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
25136763 25136763 PRJNA934332_P_NODE_2780_length_378_cov_2.019672_g2693_i0 PRJNA934332 2780 378 2.019672 7.63436016 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 117 7.319999999999999e-31   NR KAE8911393.1 53985 g2693 i0 55.2 1.66666666666667 105 41 78.6 2 370 74 13 117 KAE8911393.1 hypothetical protein PF003_g4481 [Phytophthora fragariae] diamond 630 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
26866969 26866969 PRJNA934332_P_NODE_6281_length_272_cov_1.547739_g6194_i0 PRJNA934332 6281 272 1.547739 4.20985008 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 49.3 2.51e-4   NR XP_067818293.1 4779 g6194 i0 37 1.61029411764706 73 45 80.5 1 230 12 335 406 XP_067818293.1 hypothetical protein CCR75_005396 [Bremia lactucae] diamond 438 49.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
26898506 26898506 PRJNA934332_P_NODE_5981_length_277_cov_1.509804_g5894_i0 PRJNA934332 5981 277 1.509804 4.18215708 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 58.5 1.32e-7   NR XP_008873528.1 157072 g5894 i0 37.3 4.93862815884477 102 46 97.5 4 272 3 225 320 XP_008873528.1 hypothetical protein H310_09274 [Aphanomyces invadans] diamond 1368 58.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
27214436 27214436 PRJNA934332_P_NODE_10162_length_244_cov_0.900585_g10075_i0 PRJNA934332 10162 244 0.900585 2.1974274 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00786   NR KAJ0404173.1 114742 g10075 i0 35.7 2.63114754098361 70 40 81.1 2 242 45 354 422 KAJ0404173.1 hypothetical protein ATCC90586_008624 [Pythium insidiosum] diamond 642 44.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
27404374 27404374 PRJNA934332_P_NODE_4283_length_318_cov_0.942857_g4196_i0 PRJNA934332 4283 318 0.942857 2.99828526 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.0236   NR OWZ13888.1 4795 g4196 i0 28 0.707547169811321 75 54 70.8 0 91 315 3 77 OWZ13888.1 hypothetical protein PHMEG_00012714 [Phytophthora megakarya] diamond 225 44.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
27909132 27909132 PRJNA934332_P_NODE_11445_length_236_cov_2.552147_g11358_i0 PRJNA934332 11445 236 2.552147 6.02306692 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 84 1.05e-16   NR DAZ95244.1 4803 g11358 i0 48.1 0.978813559322034 77 40 97.9 0 232 2 584 660 DAZ95244.1 TPA: hypothetical protein N0F65_002356 [Lagenidium giganteum] diamond 231 84 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
27909135 27909135 PRJNA934332_P_NODE_9565_length_246_cov_0.890173_g9478_i0 PRJNA934332 9565 246 0.890173 2.18982558 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 76.6 4.5e-14   NR TYZ61732.1 1485010 g9478 i0 55.6 0.98780487804878 81 35 98.8 1 245 3 867 946 TYZ61732.1 hypothetical protein PybrP1_012406 [[Pythium] brassicae (nom. inval.)] diamond 243 76.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
28035803 28035803 PRJNA934332_P_NODE_4225_length_319_cov_2.609756_g4138_i0 PRJNA934332 4225 319 2.609756 8.32512164 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 178 3.5e-52   NR OQR91137.1 74557 g4138 i0 79.2 2.99059561128527 106 22 99.7 0 2 319 2 107 OQR91137.1 60S ribosomal protein L3 [Thraustotheca clavata] diamond 954 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
28824789 28824789 PRJNA934332_P_NODE_1948_length_438_cov_1.789041_g1861_i0 PRJNA934332 1948 438 1.789041 7.83599958 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 102 3.39e-22   NR OQR80584.1 1202772 g1861 i0 43.4 2.08904109589041 152 74 98.6 3 5 436 656 803 OQR80584.1 ATP-binding Cassette (ABC) Superfamily [Achlya hypogyna] diamond 915 102 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
29519643 29519643 PRJNA934332_P_NODE_9470_length_246_cov_0.890173_g9383_i0 PRJNA934332 9470 246 0.890173 2.18982558 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 63.2 2.54e-9   NR KAH9099005.1 100861 g9383 i0 47.6 1 82 39 100 2 1 246 342 419 KAH9099005.1 hypothetical protein LEN26_016428, partial [Aphanomyces euteiches] diamond 246 63.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30411498 30411498 PRJNA934332_P_NODE_6633_length_266_cov_1.595855_g6546_i0 PRJNA934332 6633 266 1.595855 4.2449743 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 124 3.02e-33   NR RHY39674.1 112090 g6546 i0 71.6 12.9022556390977 88 25 99.2 0 266 3 96 183 RHY39674.1 hypothetical protein DYB34_013934 [Aphanomyces astaci] diamond 3432 125 0.992 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
30436011 30436011 PRJNA934332_P_NODE_5253_length_290_cov_1.364055_g5166_i0 PRJNA934332 5253 290 1.364055 3.9557595 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 113 1.56e-28   NR KAJ8578052.1 4785 g5166 i0 59.6 3.63103448275862 89 35 91 1 265 2 116 204 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 1053 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30467640 30467640 PRJNA934332_P_NODE_8373_length_249_cov_0.875000_g8286_i0 PRJNA934332 8373 249 0.875 2.17875 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 75.5 1.08e-13   NR OQR85592.1 1202772 g8286 i0 55.8 0.626506024096386 52 23 62.7 0 2 157 144 195 OQR85592.1 WD domain-containing protein [Achlya hypogyna] diamond 156 75.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
31422426 31422426 PRJNA934332_P_NODE_5876_length_279_cov_1.495146_g5789_i0 PRJNA934332 5876 279 1.495146 4.17145734 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 114 1.83e-30   NR XP_067789141.1 4785 g5789 i0 62.4 2.74193548387097 85 31 90.3 1 26 277 1 85 XP_067789141.1 40S ribosomal protein S10 [Phytophthora cinnamomi] diamond 765 114 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
31454207 31454207 PRJNA934332_P_NODE_8556_length_248_cov_0.880000_g8469_i0 PRJNA934332 8556 248 0.88 2.1824 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 90.9 4.44e-19   NR KAH9122749.1 100861 g8469 i0 65.7 3.42338709677419 67 23 81 0 48 248 358 424 KAH9122749.1 hypothetical protein LEN26_010131 [Aphanomyces euteiches] diamond 849 90.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
31485911 31485911 PRJNA934332_P_NODE_6276_length_272_cov_2.005025_g6189_i0 PRJNA934332 6276 272 2.005025 5.453668 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 131 2.59e-33   NR KAJ0401890.1 114742 g6189 i0 69 26.8676470588235 87 27 96 0 261 1 1 87 KAJ0401890.1 hypothetical protein ATCC90586_009012 [Pythium insidiosum] diamond 7308 132 0.992424242424242 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31542034 31542034 PRJNA934332_P_NODE_5176_length_292_cov_1.054795_g5089_i0 PRJNA934332 5176 292 1.054795 3.0800014 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 84.7 5.68e-17   NR TYZ62966.1 1485010 g5089 i0 48.9 3.84246575342466 92 46 94.5 1 287 12 189 279 TYZ62966.1 hypothetical protein PybrP1_008104 [[Pythium] brassicae (nom. inval.)] diamond 1122 84.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
32111382 32111382 PRJNA934332_P_NODE_1298_length_529_cov_1.105263_g1213_i0 PRJNA934332 1298 529 1.105263 5.84684127 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 234 6.1e-68   NR KAF0715748.1 120398 g1213 i0 68.2 18.3345935727788 173 55 98.1 0 520 2 733 905 KAF0715748.1 hypothetical protein As57867_003200 [Aphanomyces stellatus] diamond 9699 234 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32750306 32750306 PRJNA934332_P_NODE_9740_length_245_cov_0.895349_g9653_i0 PRJNA934332 9740 245 0.895349 2.19360505 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00603   NR KAG1699540.1 4784 g9653 i0 61.5 4.54285714285714 26 10 31.8 0 3 80 1753 1778 KAG1699540.1 hypothetical protein DVH05_012950 [Phytophthora capsici] diamond 1113 45.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;