RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA934332", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA934332 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22587562 22587562 PRJNA934332_P_NODE_10738_length_242_cov_0.911243_g10651_i0 PRJNA934332 10738 242 0.911243 2.20520806 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 89 7.4e-19   NR MDQ6634533.1 2026742 g10651 i0 57.7 5.24380165289256 71 30 88 0 242 30 77 147 MDQ6634533.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1269 89 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28477797 28477797 PRJNA934332_P_NODE_5526_length_285_cov_1.452830_g5439_i0 PRJNA934332 5526 285 1.45283 4.1405655 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 151 8.969999999999999e-43   NR HEX7942010.1 2026741 g5439 i0 75.8 14 95 23 100 0 1 285 201 295 HEX7942010.1 thiolase family protein [Gemmatimonadaceae bacterium] diamond 3990 151 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29740453 29740453 PRJNA934332_P_NODE_3590_length_341_cov_1.436567_g3503_i0 PRJNA934332 3590 341 1.436567 4.89869347 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 63.5 5.7e-9   NR HEV8366099.1 2026741 g3503 i0 34.8 1.01173020527859 115 70 98.5 4 339 4 26 138 HEV8366099.1 S8 family serine peptidase [Gemmatimonadaceae bacterium] diamond 345 63.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32869215 32869215 PRJNA934332_P_NODE_4720_length_304_cov_1.753247_g4633_i0 PRJNA934332 4720 304 1.753247 5.32987088 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 79.7 6.57e-15   NR HEX6631285.1 2026741 g4633 i0 47.1 2.03289473684211 104 50 97.7 2 4 300 201 304 HEX6631285.1 carboxypeptidase regulatory-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 618 79.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;