RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA934332", tax_clade = "Cyanobacteriota/Melainabacteria group" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA934332 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27182806 27182806 PRJNA934332_P_NODE_9882_length_245_cov_0.895349_g9795_i0 PRJNA934332 9882 245 0.895349 2.19360505 Aliterella atlantica 1827278 Bacteria Bacteria 166 2.82e-46   NR WP_045056675.1 1827278 g9795 i0 97.5 2.97551020408163 81 2 99.2 0 244 2 327 407 WP_045056675.1 glycosyltransferase family 2 protein [Aliterella atlantica] diamond 729 166 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Aliterellaceae Aliterella Aliterella atlantica
31383899 31383899 PRJNA934332_P_NODE_10336_length_243_cov_1.811765_g10249_i0 PRJNA934332 10336 243 1.811765 4.40258895 Richelia sp. CSU_2_1 2720414 Bacteria Bacteria 69.7 2.6e-13   NR NJR25506.1 2720414 g10249 i0 51.4 0.864197530864197 70 34 86.4 0 210 1 9 78 NJR25506.1 colicin uptake protein [Richelia sp. CSU_2_1] diamond 210 69.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Richelia Richelia sp. CSU_2_1
31833444 31833444 PRJNA934332_P_NODE_3997_length_327_cov_1.181102_g3910_i0 PRJNA934332 3997 327 1.181102 3.86220354 Alkalinema 1620700 Bacteria Bacteria 98.6 2.4e-21   NR WP_199307059.1 2692768 g3910 i0 41.3 4.00917431192661 109 63 99.1 1 324 1 143 251 WP_199307059.1 aldehyde dehydrogenase family protein [Alkalinema sp. FACHB-956] diamond 1311 99.4 0.991951710261569 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Alkalinema Alkalinema sp. FACHB-956

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;