RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA931595" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA931595 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20036213 20036213 PRJNA931595_P_NODE_13216_length_248_cov_0.880000_g13107_i0 PRJNA931595 13216 248 0.88 2.1824 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 193 1.27e-44   NTclustered gi|2874253728|emb|OY969570.1| 412054 g13107 i0 82.018 42.758064516129 228 39 92 2 8 234 868004 867778 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 10604 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
29803754 29803754 PRJNA931595_P_NODE_6551_length_313_cov_1.966667_g6442_i0 PRJNA931595 6551 313 1.966667 6.15566771 Longimicrobium sp. 2029185 Bacteria Bacteria 219 2.68e-69   NR HEX8432245.1 2029185 g6442 i0 98.1 0.996805111821086 104 2 99.7 0 1 312 103 206 HEX8432245.1 hypothetical protein [Longimicrobium sp.] diamond 312 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31383883 31383883 PRJNA931595_P_NODE_15876_length_231_cov_5.094937_g15767_i0 PRJNA931595 15876 231 5.094937 11.76930447 Longimicrobium sp. 2029185 Bacteria Bacteria 103 3.35e-26   NR HEX2081010.1 2029185 g15767 i0 86.7 0.779220779220779 60 8 77.9 0 231 52 99 158 HEX2081010.1 SRPBCC domain-containing protein [Longimicrobium sp.] diamond 180 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;