RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA931595", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA931595 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9837483 9837483 PRJNA931595_P_NODE_10468_length_268_cov_1.579487_g10359_i0 PRJNA931595 10468 268 1.579487 4.23302516 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 140 5.7699999999999995e-37   NR HEY8279436.1 3034175 g10359 i0 89.2 0.828358208955224 74 8 82.8 0 1 222 467 540 HEY8279436.1 ABC-F family ATP-binding cassette domain-containing protein [Bdellovibrionota bacterium] diamond 222 140 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
13663232 13663232 PRJNA931595_P_NODE_13991_length_246_cov_0.890173_g13882_i0 PRJNA931595 13991 246 0.890173 2.18982558 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 359 1.1699999999999999e-94   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g13882 i0 93.061 154.418699186992 245 17 99 0 1 245 699681 699925 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 37987 359 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
31130509 31130509 PRJNA931595_P_NODE_8075_length_289_cov_2.083333_g7966_i0 PRJNA931595 8075 289 2.083333 6.02083237 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 152 1.49e-41   NR HEY8279321.1 3034175 g7966 i0 77.4 0.965397923875433 93 21 96.5 0 288 10 93 185 HEY8279321.1 M20/M25/M40 family metallo-hydrolase [Bdellovibrionota bacterium] diamond 279 152 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;