RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA931595", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA931595 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4738260 4738260 PRJNA931595_P_NODE_8564_length_285_cov_1.240566_g8455_i0 PRJNA931595 8564 285 1.240566 3.5356131 Caenorhabditis elegans 6239 Nematoda Nematoda 525 1.2899999999999994e-144   NTclustered gi|1972249398|ref|NM_171025.9| 6239 g8455 i0 100 3.75087719298246 284 0 99 0 1 284 279 562 Caenorhabditis elegans putative methylenetetrahydrofolate reductase (NADPH) (mthf-1), mRNA blastn 1069 525 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6012825 6012825 PRJNA931595_P_NODE_13465_length_247_cov_1.678161_g13356_i0 PRJNA931595 13465 247 1.678161 4.14505767 Caenorhabditis elegans 6239 Nematoda Nematoda 457 4.05e-124   NTclustered gi|687865433|emb|LK927578.1| 6239 g13356 i0 100 2.46558704453441 247 0 100 0 1 247 232216 232462 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000045 blastn 609 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13663258 13663258 PRJNA931595_P_NODE_14971_length_243_cov_0.905882_g14862_i0 PRJNA931595 14971 243 0.905882 2.20129326 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.65e-122   NTclustered gi|1972265568|ref|NM_066548.8| 6239 g14862 i0 100 3.99588477366255 243 0 100 0 1 243 935 1177 Caenorhabditis elegans Uncharacterized protein (F54F2.9), mRNA blastn 971 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18761491 18761491 PRJNA931595_P_NODE_8355_length_287_cov_1.130841_g8246_i0 PRJNA931595 8355 287 1.130841 3.24551367 Caenorhabditis elegans 6239 Nematoda Nematoda 521 1.6799999999999999e-143   NTclustered gi|687866090|emb|LK927957.1| 6239 g8246 i0 99.649 2.49128919860627 285 1 99 0 1 285 55849 56133 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000364 blastn 715 521 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;