RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA931595", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA931595 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
909875 909875 PRJNA931595_P_NODE_8341_length_287_cov_1.266355_g8232_i0 PRJNA931595 8341 287 1.266355 3.63443885 Didymium iridis 5793 Evosea other_Eukaryota 291 5.17e-74   NTclustered gi|2687|emb|X60210.1| 5793 g8232 i0 85.172 1.01045296167247 290 35 99 8 4 287 5526 5239 D.iridis LSU rRNA gene blastn 290 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
9837571 9837571 PRJNA931595_P_NODE_13948_length_246_cov_0.890173_g13839_i0 PRJNA931595 13948 246 0.890173 2.18982558 Physarum polycephalum 5791 Evosea other_Eukaryota 257 4.39e-64   NTclustered gi|3221|emb|V01159.1| 5791 g13839 i0 89.756 35.3170731707317 205 15 82 5 45 246 1043 1244 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 8688 257 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
21311620 21311620 PRJNA931595_P_NODE_11777_length_255_cov_2.516484_g11668_i0 PRJNA931595 11777 255 2.516484 6.4170342 Tychosporium acutostipes 668358 Evosea other_Eukaryota 466 6.98e-127   NTclustered gi|256550195|gb|FJ792703.1| 668358 g11668 i0 99.608 30.1843137254902 255 1 100 0 1 255 531 785 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 7697 466 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
30909763 30909763 PRJNA931595_P_NODE_13614_length_247_cov_0.885057_g13505_i0 PRJNA931595 13614 247 0.885057 2.18609079 Cavenderia fasciculata 261658 Evosea other_Eukaryota 112 1.18e-26   NR XP_004356903.1 261658 g13505 i0 86.4 0.716599190283401 59 8 71.7 0 71 247 62 120 XP_004356903.1 glycyl-tRNA synthetase [Cavenderia fasciculata] diamond 177 112 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;