RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA930380" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA930380 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29810769 29810769 PRJNA930380_P_NODE_8411_length_280_cov_2.231884_g8358_i0 PRJNA930380 8411 280 2.231884 6.2492752 Trichuris 36086 Nematoda Nematoda 44.3 0.00333   NR CDW58357.1 36087 g8358 i0 62.1 1.29642857142857 29 10 30 1 20 103 22 50 CDW58357.1 hypothetical protein TTRE_0000666701 [Trichuris trichiura] diamond 363 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
32680034 32680034 PRJNA930380_P_NODE_6780_length_288_cov_1.269767_g6727_i0 PRJNA930380 6780 288 1.269767 3.65692896 Trichuris suis 68888 Nematoda Nematoda 52 8.02e-6   NR KFD49872.1 68888 g6727 i0 36.4 1.17708333333333 77 49 80.2 0 22 252 56 132 KFD49872.1 LOW QUALITY PROTEIN: hypothetical protein M513_09339 [Trichuris suis] diamond 339 52 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;