RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA930380" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA930380 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6012596 6012596 PRJNA930380_P_NODE_13845_length_243_cov_0.905882_g13792_i0 PRJNA930380 13845 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 119 4.39e-30   NR XP_006825400.1 10224 g13792 i0 68.8 9.8641975308642 80 21 98.8 1 242 3 293 368 XP_006825400.1 PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Saccoglossus kowalevskii] diamond 2397 119 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
28130553 28130553 PRJNA930380_P_NODE_8925_length_278_cov_1.014634_g8872_i0 PRJNA930380 8925 278 1.014634 2.82068252 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 43.9 0.023   NR XP_006826086.1 10224 g8872 i0 45.7 0.496402877697842 46 25 49.6 0 20 157 1118 1163 XP_006826086.1 PREDICTED: uncharacterized protein LOC102808992 [Saccoglossus kowalevskii] diamond 138 43.9 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
29424786 29424786 PRJNA930380_P_NODE_6329_length_290_cov_1.188940_g6276_i0 PRJNA930380 6329 290 1.18894 3.447926 Ptychodera flava 63121 Hemichordata other_Eukaryota 44.3 0.0183   NR XP_070552127.1 63121 g6276 i0 37.5 1.42758620689655 48 28 49.7 1 162 19 366 411 XP_070552127.1 uncharacterized protein [Ptychodera flava] diamond 414 44.3 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;