RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA930380", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA930380 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27095178 27095178 PRJNA930380_P_NODE_5962_length_291_cov_2.747706_g5909_i0 PRJNA930380 5962 291 2.747706 7.99582446 root 1 Root_unresolved Root_unresolved 61.2 3.11e-9   NR GAA6966708.1 210 g5909 i0 46.7 5.56701030927835 60 32 61.9 0 184 5 32 91 GAA6966708.1 hypothetical protein Kyoto211A_2740 [Helicobacter pylori] diamond 1620 61.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27530497 27530497 PRJNA930380_P_NODE_8603_length_279_cov_2.233010_g8550_i0 PRJNA930380 8603 279 2.23301 6.2300979 Helicobacter pylori 210 Bacteria Bacteria 51.2 1.49e-5   NR GAA9038605.1 210 g8550 i0 33.8 0.860215053763441 80 46 78.5 2 18 236 61 140 GAA9038605.1 hypothetical protein Kyoto184A_01310 [Helicobacter pylori] diamond 240 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;