RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA929952" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA929952 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3460074 3460074 PRJNA929952_P_NODE_8823_length_399_cov_4.878378_g7560_i0 PRJNA929952 8823 399 4.878378 19.46472822 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.75e-10   NTclustered gi|1931714359|ref|XR_552297.2| 54757 g7560 i0 87.324 8.90977443609023 71 8 18 1 221 290 4102 4032 Plasmodium vinckei vinckei ribosomal RNA (PVVCY_0502190), rRNA blastn 3555 80.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
5083119 5083119 PRJNA929952_P_NODE_5044_length_555_cov_9.657795_g4013_i0 PRJNA929952 5044 555 9.657795 53.60076225 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 68.6 6.08e-10   NR KAI4839932.1 5824 g4013 i0 43.5 1.49189189189189 92 39 49.7 2 555 280 32 110 KAI4839932.1 hypothetical protein MKS88_001284 [Plasmodium brasilianum] diamond 828 68.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
16212089 16212089 PRJNA929952_P_NODE_13573_length_288_cov_9.567568_g12280_i0 PRJNA929952 13573 288 9.567568 27.55459584 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 67.6 9.51e-7   NTclustered gi|1931714590|ref|XR_552295.2| 54757 g12280 i0 95.349 12.7777777777778 43 1 15 1 247 288 222 180 Plasmodium vinckei vinckei ribosomal RNA (PVVCY_0602360), rRNA blastn 3680 67.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
16212100 16212100 PRJNA929952_P_NODE_17473_length_239_cov_8.033333_g16179_i0 PRJNA929952 17473 239 8.033333 19.19966587 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 104 5.85e-18   NTclustered gi|160358922|gb|EU252544.1| 88456 g16179 i0 80.137 12.397489539749 146 23 61 6 5 150 1646 1507 Cyclospora cayetanensis 28S large subunit ribosomal RNA gene, partial sequence blastn 2963 104 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;