RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA929952", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA929952 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2184503 2184503 PRJNA929952_P_NODE_182_length_1954_cov_15.699740_g114_i1 PRJNA929952 182 1954 15.69974 306.7729196 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 1.1599999999999999e-28   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g114 i1 81.461 12.5235414534289 178 30 9 3 1558 1733 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 24471 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
7632934 7632934 PRJNA929952_P_NODE_19566_length_218_cov_2.275132_g18272_i0 PRJNA929952 19566 218 2.275132 4.95978776 root 1 Root_unresolved Root_unresolved 375 1.0099999999999998e-99   NTclustered gi|387863582|gb|JQ988843.1| 29510 g18272 i0 97.717 98.1192660550459 219 3 100 2 1 218 450 667 Turneriella parva strain Parva_DB61 16S ribosomal RNA gene, partial sequence blastn 21390 375 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
8907607 8907607 PRJNA929952_P_NODE_22707_length_172_cov_1.853147_g21413_i0 PRJNA929952 22707 172 1.853147 3.18741284 Turneriella 338321 Bacteria Bacteria 219 1.34e-52   NTclustered gi|470489162|ref|NR_076910.1| 29510 g21413 i0 89.535 61.9709302325581 172 18 100 0 1 172 21 192 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 10659 219 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
17832369 17832369 PRJNA929952_P_NODE_24454_length_153_cov_3.846774_g23160_i0 PRJNA929952 24454 153 3.846774 5.88556422 Turneriella 338321 Bacteria Bacteria 195 1.97e-45   NTclustered gi|470489162|ref|NR_076910.1| 29510 g23160 i0 89.744 4.67320261437909 156 10 98 1 1 150 1405 1560 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 715 195 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
18760766 18760766 PRJNA929952_P_NODE_175_length_1968_cov_15.678185_g114_i0 PRJNA929952 175 1968 15.678185 308.5466808 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 1.17e-28   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g114 i0 81.461 12.4344512195122 178 30 9 3 222 397 74549 74373 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 24471 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
20381138 20381138 PRJNA929952_P_NODE_15316_length_263_cov_2.470085_g14022_i0 PRJNA929952 15316 263 2.470085 6.49632355 Turneriella 338321 Bacteria Bacteria 327 3.56e-85   NTclustered gi|470489162|ref|NR_076910.1| 29510 g14022 i0 95.61 127.220532319392 205 8 99 1 2 206 171 374 Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence blastn 33459 327 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;