RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA929952", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 14 ✖

tax_kingdom 1

  • Metazoa · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA929952 · 14 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
909162 909162 PRJNA929952_P_NODE_12901_length_301_cov_2.246324_g11608_i0 PRJNA929952 12901 301 2.246324 6.76143524 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 270 7.0999999999999986e-68   NTclustered gi|1084307285|ref|XR_001974651.1| 6183 g11608 i0 91.045 3.7109634551495 201 16 90 2 102 301 206 7 Schistosoma mansoni SRP_RNA blastn 1117 270 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
2184496 2184496 PRJNA929952_P_NODE_15262_length_263_cov_5.051282_g13968_i0 PRJNA929952 15262 263 5.051282 13.28487166 Cryptocotyle lingua 66766 Platyhelminthes Platyhelminthes 339 1.65e-88   NTclustered gi|1964739497|gb|MW361240.1| 66766 g13968 i0 90.226 101.228136882129 266 16 100 8 1 263 5934 6192 Cryptocotyle lingua 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 26623 339 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Cryptocotyle Cryptocotyle lingua
3460037 3460037 PRJNA929952_P_NODE_19283_length_221_cov_4.604167_g17989_i0 PRJNA929952 19283 221 4.604167 10.17520907 Centrocestus formosanus 234883 Platyhelminthes Platyhelminthes 409 1.0100000000000001e-109   NTclustered gi|2592178324|gb|OR671448.1| 234883 g17989 i0 100 100.081447963801 221 0 100 0 1 221 1153 933 Centrocestus formosanus isolate CFCh large subunit ribosomal RNA gene, partial sequence blastn 22118 409 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Centrocestus Centrocestus formosanus
4737524 4737524 PRJNA929952_P_NODE_22344_length_176_cov_2.027211_g21050_i0 PRJNA929952 22344 176 2.027211 3.56789136 Hysteromorpha triloba 234889 Platyhelminthes Platyhelminthes 58.4 3.19e-4   NTclustered gi|1511118671|gb|MG770070.1| 234889 g21050 i0 100 0.176136363636364 31 0 18 0 5 35 478 508 Hysteromorpha triloba voucher 3LF-2754 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Diplostomida Diplostomidae Hysteromorpha Hysteromorpha triloba
8562080 8562080 PRJNA929952_P_NODE_15347_length_262_cov_12.347639_g14053_i0 PRJNA929952 15347 262 12.347639 32.35081418 Centrocestus formosanus 234883 Platyhelminthes Platyhelminthes 484 1.99e-132   NTclustered gi|32264723|gb|AY245759.1| 234883 g14053 i0 100 100.332061068702 262 0 100 0 1 262 857 596 Centrocestus formosanus 18S ribosomal RNA gene, partial sequence blastn 26287 484 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Centrocestus Centrocestus formosanus
9837130 9837130 PRJNA929952_P_NODE_13748_length_285_cov_19.281250_g12455_i0 PRJNA929952 13748 285 19.28125 54.9515625 Metorchis orientalis 674132 Platyhelminthes Platyhelminthes 449 7.99e-122   NTclustered gi|1632161486|gb|MK482053.1| 674132 g12455 i0 95.088 95.6315789473684 285 14 100 0 1 285 7206 6922 Metorchis orientalis isolate MOC 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; and 28S-18S ribosomal RNA intergenic spacer, partial sequence blastn 27255 449 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Metorchis Metorchis orientalis
9837165 9837165 PRJNA929952_P_NODE_3888_length_633_cov_6.286424_g2990_i0 PRJNA929952 3888 633 6.286424 39.79306392 Centrocestus formosanus 234883 Platyhelminthes Platyhelminthes 1050 0   NTclustered gi|2905014696|gb|PV021483.1| 234883 g2990 i0 96.672 31.4186413902054 631 21 99 0 1 631 9568 10198 Centrocestus formosanus mitochondrion, complete genome blastn 19888 1050 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Centrocestus Centrocestus formosanus
16212094 16212094 PRJNA929952_P_NODE_1453_length_962_cov_4.540193_g1040_i0 PRJNA929952 1453 962 4.540193 43.67665666 Centrocestus formosanus 234883 Platyhelminthes Platyhelminthes 1321 0   NTclustered gi|2905014696|gb|PV021483.1| 234883 g1040 i0 94.768 29.8357588357588 841 36 93 1 6 838 8514 9354 Centrocestus formosanus mitochondrion, complete genome blastn 28702 1321 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Centrocestus Centrocestus formosanus
18760791 18760791 PRJNA929952_P_NODE_4255_length_606_cov_5.904679_g3310_i0 PRJNA929952 4255 606 5.904679 35.78235474 Bresslauilla relicta 1311963 Platyhelminthes Platyhelminthes 71.3 1.66e-7   NTclustered gi|588313927|gb|KC869885.1| 1311963 g3310 i0 80.851 0.282178217821782 94 14 16 2 123 216 1623 1712 Bresslauilla relicta 28S ribosomal RNA genes, partial sequence blastn 171 71.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Graffillidae Bresslauilla Bresslauilla relicta
20035747 20035747 PRJNA929952_P_NODE_10436_length_354_cov_9.941538_g9147_i0 PRJNA929952 10436 354 9.941538 35.19304452 Liliatrema skrjabini 2725056 Platyhelminthes Platyhelminthes 571 2.0799999999999995e-158   NTclustered gi|1829007491|gb|MT303945.1| 2725056 g9147 i0 95.763 99.545197740113 354 15 100 0 1 354 2038 2391 Liliatrema skrjabini voucher L13_2 large subunit ribosomal RNA gene, partial sequence blastn 35239 571 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Liliatrematidae Liliatrema Liliatrema skrjabini
21311251 21311251 PRJNA929952_P_NODE_23897_length_159_cov_1.861538_g22603_i0 PRJNA929952 23897 159 1.861538 2.95984542 Centrocestus formosanus 234883 Platyhelminthes Platyhelminthes 294 1.98e-75   NTclustered gi|335060634|gb|HQ874608.1| 234883 g22603 i0 100 100.012578616352 159 0 100 0 1 159 267 109 Centrocestus formosanus 18S ribosomal RNA gene, partial sequence blastn 15902 294 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Centrocestus Centrocestus formosanus
23861467 23861467 PRJNA929952_P_NODE_23339_length_165_cov_1.448529_g22045_i0 PRJNA929952 23339 165 1.448529 2.39007285 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.014   NTclustered gi|690493181|emb|LN038990.1| 99802 g22045 i0 100 0.16969696969697 28 0 17 0 113 140 51 78 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0038092 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
25135301 25135301 PRJNA929952_P_NODE_21060_length_193_cov_9.542683_g19766_i0 PRJNA929952 21060 193 9.542683 18.41737819 Cryptocotyle lingua 66766 Platyhelminthes Platyhelminthes 313 6.91e-81   NTclustered gi|1964739497|gb|MW361240.1| 66766 g19766 i0 95.855 101.020725388601 193 8 100 0 1 193 5160 5352 Cryptocotyle lingua 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 19497 313 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Heterophyidae Cryptocotyle Cryptocotyle lingua
25135302 25135302 PRJNA929952_P_NODE_21220_length_191_cov_3.666667_g19926_i0 PRJNA929952 21220 191 3.666667 7.00333397 Clonorchis sinensis 79923 Platyhelminthes Platyhelminthes 281 1.92e-71   NTclustered gi|1632161474|gb|MK450523.1| 79923 g19926 i0 93.194 83.455497382199 191 13 100 0 1 191 6356 6166 Clonorchis sinensis isolate CSA 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; and 28S-18S ribosomal RNA intergenic spacer, partial sequence blastn 15940 281 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;