RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929952", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA929952 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9837174 9837174 PRJNA929952_P_NODE_6548_length_480_cov_3.891353_g5394_i0 PRJNA929952 6548 480 3.891353 18.6784944 Campydora demonstrans 211217 Nematoda Nematoda 60.2 2.79e-4   NTclustered gi|2623950732|gb|OR852751.1| 211217 g5394 i0 94.737 1.9 38 2 8 0 163 200 4724 4761 Campydora demonstrans isolate OVN-2022 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 912 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Enoplida Campydoridae Campydora Campydora demonstrans
25135332 25135332 PRJNA929952_P_NODE_9600_length_378_cov_3.401146_g8322_i0 PRJNA929952 9600 378 3.401146 12.85633188 Filenchus sp. 3 TJP-2012 1166537 Nematoda Nematoda 82.4 4.59e-11   NTclustered gi|384482669|gb|JQ005013.1| 1166537 g8322 i0 86.667 0.198412698412698 75 8 20 2 192 265 663 736 Filenchus sp. 3 TJP-2012 isolate 32T16I09 large subunit ribosomal RNA gene, partial sequence blastn 75 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Filenchus Filenchus sp. 3 TJP-2012
26835197 26835197 PRJNA929952_P_NODE_24361_length_154_cov_3.112000_g23067_i0 PRJNA929952 24361 154 3.112 4.79248 Strongyloides ratti 34506 Nematoda Nematoda 44.3 6.18e-4   NR XP_024500773.1 34506 g23067 i0 64.3 2.43506493506493 28 10 54.5 0 56 139 42 69 XP_024500773.1 Hypothetical protein SRAE_0000068266 [Strongyloides ratti] diamond 375 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;