RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA929952", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA929952 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12388316 12388316 PRJNA929952_P_NODE_21170_length_192_cov_2.601227_g19876_i0 PRJNA929952 21170 192 2.601227 4.99435584 Chloroflexota bacterium 2026724 Bacteria Bacteria 97.1 7.53e-16   NTclustered gi|2621702192|emb|OY760183.1| 2026724 g19876 i0 87.059 17.109375 85 11 44 0 108 192 2634506 2634422 MAG: Chloroflexota bacterium isolate 1e5240b1-722b-4dd6-bc08-6f4f73fd4587 genome assembly, chromosome: 1 blastn 3285 97.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
15282726 15282726 PRJNA929952_P_NODE_20992_length_194_cov_3.775758_g19698_i0 PRJNA929952 20992 194 3.775758 7.32497052 Caldilinea 233191 Bacteria Bacteria 228 2.5899999999999992e-55   NTclustered gi|470476010|ref|NR_076314.1| 133453 g19698 i0 89.831 188.412371134021 177 18 91 0 18 194 2807 2631 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 36552 228 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila
17487447 17487447 PRJNA929952_P_NODE_5734_length_518_cov_21.145194_g4640_i0 PRJNA929952 5734 518 21.145194 109.53210492 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 409 2.61e-109   NTclustered gi|170792181|gb|EU403845.1| 166587 g4640 i0 88.496 88.3050193050193 339 38 65 1 1 338 339 1 Uncultured Chloroflexi bacterium clone MP9B40 16S ribosomal RNA gene, partial sequence blastn 45742 409 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium
17832368 17832368 PRJNA929952_P_NODE_24254_length_155_cov_4.150794_g22960_i0 PRJNA929952 24254 155 4.150794 6.4337307 Caldilinea 233191 Bacteria Bacteria 215 1.54e-51   NTclustered gi|470476010|ref|NR_076314.1| 133453 g22960 i0 91.667 104.412903225806 156 12 100 1 1 155 2931 2776 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 16184 215 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;