RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA929952", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA929952 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8562062 8562062 PRJNA929952_P_NODE_11347_length_332_cov_7.363036_g10057_i0 PRJNA929952 11347 332 7.363036 24.44527952 Cyathus bulleri 184115 Fungi Fungi 302 2.81e-77   NTclustered gi|1483540623|gb|MH988747.1| 184115 g10057 i0 83.481 114.024096385542 339 41 99 12 4 332 1788 1455 Cyathus bulleri isolate Soil large subunit ribosomal RNA gene, partial sequence blastn 37856 302 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Nidulariaceae Cyathus Cyathus bulleri
9837142 9837142 PRJNA929952_P_NODE_18628_length_228_cov_12.296482_g17334_i0 PRJNA929952 18628 228 12.296482 28.03597896 Phragmidium rosae-multiflorae 1911144 Fungi Fungi 67.6 7.26e-7   NTclustered gi|2833722595|gb|PQ472144.1| 1911144 g17334 i0 91.837 2.44736842105263 49 3 21 1 154 201 261 213 Phragmidium rosae-multiflorae voucher GMB4044 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 558 67.6 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Phragmidiaceae Phragmidium Phragmidium rosae-multiflorae
14937121 14937121 PRJNA929952_P_NODE_23572_length_162_cov_2.481203_g22278_i0 PRJNA929952 23572 162 2.481203 4.01954886 Vanrija albida 181172 Fungi Fungi 52.8 0.013   NTclustered gi|2837737300|ref|XM_069355063.1| 181172 g22278 i0 100 0.172839506172839 28 0 17 0 72 99 315 288 Vanrija albida uncharacterized protein (Q8F55_006606), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Vanrija Vanrija albida
20035772 20035772 PRJNA929952_P_NODE_21476_length_188_cov_2.320755_g20182_i0 PRJNA929952 21476 188 2.320755 4.3630194 Malassezia restricta 76775 Fungi Fungi 337 3.97e-88   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g20182 i0 98.936 83.0425531914894 188 2 100 0 1 188 1542 1729 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 15612 337 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
27126362 27126362 PRJNA929952_P_NODE_24022_length_157_cov_4.421875_g22728_i0 PRJNA929952 24022 157 4.421875 6.94234375 Eukaryota 2759 Fungi Fungi 43.9 0.00464   NR PAV16010.1 2282107 g22728 i0 51.6 24.4394904458599 31 15 59.2 0 93 1 654 684 PAV16010.1 RNA-dependent DNA polymerase [Pyrrhoderma noxium] diamond 3837 43.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Hymenochaetales Hymenochaetaceae Pyrrhoderma Pyrrhoderma noxium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;