RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA929952", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA929952 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6012432 6012432 PRJNA929952_P_NODE_7205_length_454_cov_35.202353_g6002_i0 PRJNA929952 7205 454 35.202353 159.81868262 Squamamoeba japonica 1167875 Evosea other_Eukaryota 99 5.57e-16   NTclustered gi|381423465|gb|JN638030.1| 1167875 g6002 i0 88.095 0.555066079295154 84 9 19 1 192 275 1749 1667 Squamamoeba japonica strain CCAP 1593/1 clone 2218 18S ribosomal RNA gene, partial sequence blastn 252 99 1 Eukaryota Amoebozoa   Evosea       Squamamoeba Squamamoeba japonica
12388320 12388320 PRJNA929952_P_NODE_2230_length_801_cov_19.265544_g1621_i0 PRJNA929952 2230 801 19.265544 154.31700744 Phalansterium filosum 857046 Evosea other_Eukaryota 126 4.67e-24   NTclustered gi|300078501|gb|GU001163.1| 857046 g1621 i0 76.496 11.9662921348315 234 54 29 1 366 598 2563 2796 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9585 126 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
14008797 14008797 PRJNA929952_P_NODE_21711_length_184_cov_19.974194_g20417_i0 PRJNA929952 21711 184 19.974194 36.75251696 Flamella 490353 Evosea other_Eukaryota 340 2.99e-89   NTclustered gi|163943979|gb|EU186023.1| 490516 g20417 i0 100 83.7663043478261 184 0 100 0 1 184 1691 1508 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 15413 340 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia
17832363 17832363 PRJNA929952_P_NODE_19114_length_223_cov_13.989691_g17820_i0 PRJNA929952 19114 223 13.989691 31.19701093 Flamella 490353 Evosea other_Eukaryota 379 7.999999999999999e-101   NTclustered gi|163943980|gb|EU186024.1| 490518 g17820 i0 97.309 54.5964125560538 223 6 100 0 1 223 127 349 Flamella fluviatilis 18S ribosomal RNA gene, partial sequence blastn 12175 379 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella fluviatilis
20035771 20035771 PRJNA929952_P_NODE_21136_length_192_cov_5.300613_g19842_i0 PRJNA929952 21136 192 5.300613 10.17717696 Flamella fluviatilis 490518 Evosea other_Eukaryota 259 9.08e-65   NTclustered gi|163943980|gb|EU186024.1| 490518 g19842 i0 91.146 52.1302083333333 192 16 100 1 1 192 1317 1507 Flamella fluviatilis 18S ribosomal RNA gene, partial sequence blastn 10009 259 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella fluviatilis
22586147 22586147 PRJNA929952_P_NODE_23358_length_164_cov_4.059259_g22064_i0 PRJNA929952 23358 164 4.059259 6.65718476 Flamella balnearia 490516 Evosea other_Eukaryota 303 3.42e-78   NTclustered gi|163943979|gb|EU186023.1| 490516 g22064 i0 100 53.0792682926829 164 0 100 0 1 164 1345 1508 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 8705 303 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia
22932618 22932618 PRJNA929952_P_NODE_12438_length_309_cov_57.367857_g11145_i0 PRJNA929952 12438 309 57.367857 177.26667813 Flamella 490353 Evosea other_Eukaryota 477 4.0199999999999996e-130   NTclustered gi|163943979|gb|EU186023.1| 490516 g11145 i0 94.534 72.5728155339806 311 14 100 3 1 309 614 923 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 22425 477 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;