RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA929940" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA929940 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20035728 20035728 PRJNA929940_S_NODE_23036_length_217_cov_1.255556_g22801_i0 PRJNA929940 23036 217 1.255556 2.72455652 Acropora muricata 159855 Cnidaria other_Eukaryota 58.4 4.12e-4   NTclustered gi|2784661215|ref|XM_067161009.1| 159855 g22801 i0 87.755 0.67741935483871 49 6 23 0 164 212 6097 6049 PREDICTED: Acropora muricata uncharacterized protein (LOC136888245), transcript variant X1, mRNA blastn 147 58.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora muricata
29874103 29874103 PRJNA929940_S_NODE_25451_length_208_cov_5.005848_g25216_i0 PRJNA929940 25451 208 5.005848 10.41216384 Metazoa 33208 Cnidaria other_Eukaryota 144 1.0299999999999999e-40   NR KAK2561111.1 6130 g25216 i0 100 203.942307692308 68 0 98.1 0 1 204 191 258 KAK2561111.1 Serine/threonine-protein phosphatase PP1-beta catalytic subunit [Acropora cervicornis] diamond 42420 144 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora cervicornis
29993468 29993468 PRJNA929940_S_NODE_36931_length_180_cov_2.881119_g36696_i0 PRJNA929940 36931 180 2.881119 5.1860142 Nematostella vectensis 45351 Cnidaria other_Eukaryota 65.9 1.09e-10   NR XP_048578445.1 45351 g36696 i0 65 0.666666666666667 40 14 66.7 0 178 59 271 310 XP_048578445.1 sushi, nidogen and EGF-like domain-containing protein 1 isoform X3 [Nematostella vectensis] diamond 120 65.9 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella Nematostella vectensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;