RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929940", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929940 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30182896 30182896 PRJNA929940_S_NODE_10752_length_290_cov_2.079051_g10517_i0 PRJNA929940 10752 290 2.079051 6.0292479 Helicobacter pylori 210 Bacteria Bacteria 41.6 0.0209   NR WP_231167000.1 210 g10517 i0 44.2 0.537931034482759 52 29 53.8 0 225 70 1 52 WP_231167000.1 hypothetical protein [Helicobacter pylori] diamond 156 41.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30309801 30309801 PRJNA929940_S_NODE_2092_length_519_cov_3.149378_g1870_i0 PRJNA929940 2092 519 3.149378 16.34527182 uncultured Campylobacterales bacterium 352960 Bacteria Bacteria 46.2 0.0304   NR CAA6806889.1 352960 g1870 i0 26.4 0.745664739884393 129 65 64.7 4 347 12 42 157 CAA6806889.1 MAG: Phosphoglycerol transferase I (EC [uncultured Campylobacterales bacterium] diamond 387 46.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     uncultured Campylobacterales bacterium
32743393 32743393 PRJNA929940_S_NODE_12520_length_274_cov_2.392405_g12285_i0 PRJNA929940 12520 274 2.392405 6.5551897 Helicobacter sp. 218 Bacteria Bacteria 43.1 0.0372   NR MDY5949964.1 218 g12285 i0 41.2 0.558394160583942 51 27 52.6 1 87 230 31 81 MDY5949964.1 hypothetical protein [Helicobacter sp.] diamond 153 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;