RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA929940" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929940 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12388284 12388284 PRJNA929940_S_NODE_49730_length_161_cov_1.016129_g49495_i0 PRJNA929940 49730 161 1.016129 1.63596769 Neomicrococcus aestuarii 556325 Bacteria Bacteria 56.5 0.001   NTclustered gi|1109133054|gb|CP018135.1| 556325 g49495 i0 96.97 0.204968944099379 33 1 20 0 75 107 1146950 1146918 Neomicrococcus aestuarii strain B18 chromosome, complete genome blastn 33 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Neomicrococcus Neomicrococcus aestuarii
15282713 15282713 PRJNA929940_S_NODE_55692_length_154_cov_1.316239_g55457_i0 PRJNA929940 55692 154 1.316239 2.02700806 Micrococcus 1269 Bacteria Bacteria 279 5.33e-71   NTclustered gi|1891023613|gb|CP058971.1| 1270 g55457 i0 99.351 340.876623376623 154 1 100 0 1 154 346142 346295 Micrococcus luteus strain V017 chromosome, complete genome blastn 52495 279 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
16212069 16212069 PRJNA929940_S_NODE_30513_length_194_cov_2.783439_g30278_i0 PRJNA929940 30513 194 2.783439 5.39987166 uncultured Actinomycetes bacterium 152507 Bacteria Bacteria 348 1.91e-91   NTclustered gi|686688730|gb|KM031457.1| 152507 g30278 i0 98.969 98.2886597938144 194 2 100 0 1 194 397 590 Uncultured actinobacterium clone D9-49 16S ribosomal RNA gene, partial sequence blastn 19068 348 1 Bacteria   Bacillati Actinomycetota Actinomycetes       uncultured Actinomycetes bacterium
20381129 20381129 PRJNA929940_S_NODE_18016_length_239_cov_1.504950_g17781_i0 PRJNA929940 18016 239 1.50495 3.5968305 Micrococcus 1269 Bacteria Bacteria 412 8.549999999999998e-111   NTclustered gi|1891023613|gb|CP058971.1| 1270 g17781 i0 97.908 191.02510460251 239 3 100 2 1 239 346165 345929 Micrococcus luteus strain V017 chromosome, complete genome blastn 45655 412 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
24206365 24206365 PRJNA929940_S_NODE_49119_length_161_cov_3.209677_g48884_i0 PRJNA929940 49119 161 3.209677 5.16757997 Micrococcus 1269 Bacteria Bacteria 298 1.56e-76   NTclustered gi|1891023613|gb|CP058971.1| 1270 g48884 i0 100 295.478260869565 161 0 100 0 1 161 345721 345561 Micrococcus luteus strain V017 chromosome, complete genome blastn 47572 298 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
27656975 27656975 PRJNA929940_S_NODE_22604_length_218_cov_2.425414_g22369_i0 PRJNA929940 22604 218 2.425414 5.28740252 Streptomyces sp. NBC_ 1931 Bacteria Bacteria 43.1 0.0199   NR WP_327288926.1 2903769 g22369 i0 39.6 0.729357798165138 53 27 72.9 1 205 47 225 272 WP_327288926.1 S9 family peptidase [Streptomyces sp. NBC_01198] diamond 159 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_01198
28137632 28137632 PRJNA929940_S_NODE_7645_length_328_cov_3.154639_g7410_i0 PRJNA929940 7645 328 3.154639 10.34721592 Bacteria 2 Bacteria Bacteria 44.3 0.0227   NR WP_409923725.1 1967498 g7410 i0 26.5 1.85670731707317 102 64 89.6 2 308 15 138 232 WP_409923725.1 GntR family transcriptional regulator [Ilumatobacter sp.] diamond 609 44.7 0.991051454138702 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter sp.
29456184 29456184 PRJNA929940_S_NODE_57510_length_152_cov_1.426087_g57275_i0 PRJNA929940 57510 152 1.426087 2.16765224 Actinomycetota bacterium 2900548 Bacteria Bacteria 55.8 2.52e-7   NR MFM8237608.1 2900548 g57275 i0 92.3 4.55921052631579 26 2 51.3 0 152 75 27 52 MFM8237608.1 adenosylhomocysteinase [Actinomycetota bacterium] diamond 693 55.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;