RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA929940" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA929940 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12388285 12388285 PRJNA929940_S_NODE_51010_length_159_cov_1.868852_g50775_i0 PRJNA929940 51010 159 1.868852 2.97147468 Fritschiella tuberosa 56004 Plants Plants 52.8 0.013   NTclustered gi|1832106193|gb|MN701159.1| 56004 g50775 i0 100 0.176100628930818 28 0 18 0 4 31 54261 54288 Fritschiella tuberosa chloroplast, partial genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Fritschiellaceae Fritschiella Fritschiella tuberosa
30688319 30688319 PRJNA929940_S_NODE_4913_length_384_cov_2.025937_g4678_i0 PRJNA929940 4913 384 2.025937 7.77959808 Dunaliella salina 3046 Plants Plants 42.4 0.0364   NR KAF5825816.1 3046 g4678 i0 31.3 0.5 64 41 48.4 2 302 117 23 85 KAF5825816.1 hypothetical protein DUNSADRAFT_6721, partial [Dunaliella salina] diamond 192 42.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;