RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA929940", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA929940 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26936963 26936963 PRJNA929940_S_NODE_23922_length_213_cov_16.869318_g23687_i0 PRJNA929940 23922 213 16.869318 35.93164734 root 1 Root_unresolved Root_unresolved 133 1.38e-36   NR CAH8633832.1 6188 g23687 i0 98.6 319.183098591549 71 1 100 0 213 1 173 243 CAH8633832.1 unnamed protein product [Schistosoma rodhaini] diamond 67986 134 0.992537313432836 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma rodhaini
31960127 31960127 PRJNA929940_S_NODE_57137_length_152_cov_2.313043_g56902_i0 PRJNA929940 57137 152 2.313043 3.51582536 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 8.02e-26   NR AAX25751.2 6182 g56902 i0 98 256.578947368421 50 1 98.7 0 151 2 34 83 AAX25751.2 SJCHGC04980 protein, partial [Schistosoma japonicum] diamond 39000 102 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;