RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA929940", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA929940 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27467473 27467473 PRJNA929940_S_NODE_20983_length_225_cov_1.601064_g20748_i0 PRJNA929940 20983 225 1.601064 3.602394 Cylicostephanus goldi 71465 Nematoda Nematoda 63.5 3.95e-10   NR VDN21436.1 71465 g20748 i0 57.8 0.6 45 19 60 0 218 84 22 66 VDN21436.1 unnamed protein product, partial [Cylicostephanus goldi] diamond 135 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicostephanus Cylicostephanus goldi
30846456 30846456 PRJNA929940_S_NODE_39174_length_176_cov_2.489209_g38939_i0 PRJNA929940 39174 176 2.489209 4.38100784 Trichinella nativa 6335 Nematoda Nematoda 113 5.22e-28   NR OUC39547.1 6335 g38939 i0 86.2 0.988636363636364 58 8 98.9 0 176 3 182 239 OUC39547.1 WD domain, G-beta repeat protein [Trichinella nativa] diamond 174 113 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;