RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929940", tax_clade = "Opisthokonta" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA929940 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28358338 28358338 PRJNA929940_S_NODE_34966_length_184_cov_2.829932_g34731_i0 PRJNA929940 34966 184 2.829932 5.20707488 Metazoa 33208 Echinodermata other_Eukaryota 99 2.74e-22   NR XP_030854690.1 7668 g34731 i0 96.1 156.29347826087 51 2 83.2 0 2 154 3684 3734 XP_030854690.1 cytoplasmic dynein 1 heavy chain 1 [Strongylocentrotus purpuratus] diamond 28758 99.8 0.991983967935872 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
30632140 30632140 PRJNA929940_S_NODE_30173_length_195_cov_2.297468_g29938_i0 PRJNA929940 30173 195 2.297468 4.4800626 Metazoa 33208 Echinodermata other_Eukaryota 137 5.89e-36   NR XP_041455132.1 7654 g29938 i0 98.5 287 65 1 100 0 195 1 353 417 XP_041455132.1 caseinolytic peptidase B protein homolog [Lytechinus variegatus] diamond 55965 138 0.992753623188406 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
32023507 32023507 PRJNA929940_S_NODE_4498_length_396_cov_9.916435_g4264_i0 PRJNA929940 4498 396 9.916435 39.2690826 Metazoa 33208 Echinodermata other_Eukaryota 93.6 5.78e-22   NR XP_041472041.1 7654 g4264 i0 97.6 47.2575757575758 42 1 31.8 0 396 271 54 95 XP_041472041.1 protein transport protein Sec61 subunit beta-like [Lytechinus variegatus] diamond 18714 94.4 0.991525423728813 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;