RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA929924", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929924 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1254098 1254098 PRJNA929924_P_NODE_10941_length_224_cov_0.891429_g10778_i0 PRJNA929924 10941 224 0.891429 1.99680096 Myxococcaceae 31 Bacteria Bacteria 311 2.97e-80   NTclustered gi|2869653495|gb|CP175551.1| 33 g10778 i0 91.928 259.839285714286 223 17 99 1 3 224 3534 3312 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 58204 311 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
27979605 27979605 PRJNA929924_P_NODE_16585_length_166_cov_0.871795_g16422_i0 PRJNA929924 16585 166 0.871795 1.4471797 Pseudomonadati 3379134 Bacteria Bacteria 67.4 2.65e-11   NR MCK9264935.1 2026735 g16422 i0 70.2 4.98795180722892 47 14 84.9 0 26 166 240 286 MCK9264935.1 asparagine synthase (glutamine-hydrolyzing) [Deltaproteobacteria bacterium] diamond 828 67.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;