RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929924" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA929924 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
908890 908890 PRJNA929924_P_NODE_15881_length_167_cov_0.881356_g15718_i0 PRJNA929924 15881 167 0.881356 1.47186452 Mizuhopecten yessoensis 6573 Mollusca Mollusca 113 6.34e-21   NTclustered gi|1207980183|ref|XM_021483941.1| 6573 g15718 i0 83.74 0.736526946107784 123 17 72 2 4 123 181 303 PREDICTED: Mizuhopecten yessoensis 60S ribosomal protein L3-B-like (LOC110440810), mRNA blastn 123 113 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
1254191 1254191 PRJNA929924_P_NODE_17881_length_163_cov_0.912281_g17718_i0 PRJNA929924 17881 163 0.912281 1.48701803 Haliotis 6452 Mollusca Mollusca 302 1.22e-77   NTclustered gi|2911839840|ref|XR_011653606.1| 6455 g17718 i0 100 100.018404907975 163 0 100 0 1 163 589 427 PREDICTED: Haliotis cracherodii large subunit ribosomal RNA (LOC139466570), rRNA blastn 16303 302 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis cracherodii
8906998 8906998 PRJNA929924_P_NODE_14687_length_171_cov_1.688525_g14524_i0 PRJNA929924 14687 171 1.688525 2.88737775 Haliotis 6452 Mollusca Mollusca 289 1e-73   NTclustered gi|2245670518|ref|XM_046510609.2| 6454 g14524 i0 97.076 3 171 5 100 0 1 171 1596 1766 PREDICTED: Haliotis rufescens myosin regulatory light chain 12B-like (LOC124142261), mRNA blastn 513 289 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;