RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA929924" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA929924 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7632317 7632317 PRJNA929924_P_NODE_14666_length_171_cov_2.524590_g14503_i0 PRJNA929924 14666 171 2.52459 4.3170489 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 71.3 3.95e-8   NTclustered gi|288272|emb|X58846.1| 5911 g14503 i0 100 6.25730994152047 38 0 22 0 1 38 29 66 T.thermophila U2.2 snRNA blastn 1070 71.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27341168 27341168 PRJNA929924_P_NODE_16443_length_166_cov_0.888889_g16280_i0 PRJNA929924 16443 166 0.888889 1.47555574 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0175   NR KRW99552.1 266149 g16280 i0 43.5 0.831325301204819 46 26 83.1 0 138 1 210 255 KRW99552.1 hypothetical protein PPERSA_01198 [Pseudocohnilembus persalinus] diamond 138 42.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
28761770 28761770 PRJNA929924_P_NODE_16787_length_165_cov_0.896552_g16624_i0 PRJNA929924 16787 165 0.896552 1.4793108 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 55.5 4.09e-7   NR XP_001441532.1 5888 g16624 i0 56.4 0.709090909090909 39 17 70.9 0 9 125 65 103 XP_001441532.1 uncharacterized protein GSPATT00010369001 [Paramecium tetraurelia] diamond 117 55.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
30719950 30719950 PRJNA929924_P_NODE_15554_length_168_cov_0.873950_g15391_i0 PRJNA929924 15554 168 0.87395 1.468236 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 74.3 1.63e-14   NR KRX00852.1 266149 g15391 i0 62.5 2 56 21 100 0 1 168 101 156 KRX00852.1 P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus] diamond 336 74.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;