RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA929924", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA929924 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10182860 10182860 PRJNA929924_P_NODE_16008_length_167_cov_0.881356_g15845_i0 PRJNA929924 16008 167 0.881356 1.47186452 Pseudomonadati 3379134 Bacteria Bacteria 209 7.85e-50   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g15845 i0 89.286 172.988023952096 168 17 100 1 1 167 1712736 1712903 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 28889 209 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
12388165 12388165 PRJNA929924_P_NODE_6190_length_488_cov_2.783599_g6027_i0 PRJNA929924 6190 488 2.783599 13.58396312 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 381 5.339999999999999e-101   NTclustered gi|2304357171|dbj|AP024233.1| 2795293 g6027 i0 81.429 356.993852459016 490 70 98 18 9 488 1926293 1926771 Desulfobulbaceae bacterium GF1 GF1 DNA, complete genome blastn 174213 381 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;