RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA929924", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA929924 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4737220 4737220 PRJNA929924_P_NODE_12384_length_197_cov_1.405405_g12221_i0 PRJNA929924 12384 197 1.405405 2.76864785 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 359 8.98e-95   NTclustered gi|2874254096|emb|OY970179.1| 412056 g12221 i0 99.492 109.157360406091 197 1 100 0 1 197 555271 555075 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 21504 359 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11112472 11112472 PRJNA929924_P_NODE_10829_length_226_cov_1.468927_g10666_i0 PRJNA929924 10829 226 1.468927 3.31977502 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 407 3.73e-109   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g10666 i0 99.115 89.0619469026549 226 2 100 0 1 226 626 851 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 20128 407 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
17487180 17487180 PRJNA929924_P_NODE_17114_length_164_cov_0.991304_g16951_i0 PRJNA929924 17114 164 0.991304 1.62573856 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 261 2.09e-65   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g16951 i0 95.21 273.420731707317 167 4 100 4 1 164 632 467 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 44841 261 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;