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contig_metadata

29 rows where bioproject = "PRJNA929922", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 29 ✖

tax_phylum 1

  • Pisuviricota · 29 ✖

tax_kingdom 1

bioproject 1

  • PRJNA929922 · 29 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
907372 907372 PRJNA929922_P_NODE_72281_length_288_cov_1.976744_g71741_i0 PRJNA929922 72281 288 1.976744 5.69302272 Betacoronavirus pandemicum 3418604 Viruses Viruses 449 8.090000000000001e-122   NTclustered gi|2546770426|emb|OY286986.1| 2697049 g71741 i0 99.2 103.138888888889 250 1 100 1 1 250 6848 6600 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 29704 449 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2183670 2183670 PRJNA929922_S_NODE_42742_length_284_cov_0.781991_g42518_i0 PRJNA929922 42742 284 0.781991 2.22085444 Betacoronavirus pandemicum 3418604 Viruses Viruses 119 2.55e-22   NTclustered gi|2165835433|emb|OV196499.1| 2697049 g42518 i0 94.872 22.6338028169014 78 1 27 3 1 77 30159 30084 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 6428 119 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
3457663 3457663 PRJNA929922_P_NODE_203_length_4158_cov_8.498409_g84_i0 PRJNA929922 203 4158 8.498409 353.36384622 Betacoronavirus pandemicum 3418604 Viruses Viruses 7662 0   NTclustered gi|2633503320|gb|OR938562.1| 2697049 g84 i0 99.952 99.9045214045214 4155 2 99 0 1 4155 16088 20242 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SEARCH-5107-SAN/2020, complete genome blastn 415403 7662 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
3458021 3458021 PRJNA929922_P_NODE_5103_length_659_cov_1.684300_g4606_i0 PRJNA929922 5103 659 1.6843 11.099537 Betacoronavirus pandemicum 3418604 Viruses Viruses 1206 0   NTclustered gi|1834445780|gb|MT252688.1| 2697049 g4606 i0 100 99.2610015174507 653 0 99 0 1 653 654 2 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW89/2020, complete genome blastn 65413 1206 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
6009958 6009958 PRJNA929922_P_NODE_19465_length_425_cov_2.730114_g18930_i0 PRJNA929922 19465 425 2.730114 11.6029845 Betacoronavirus pandemicum 3418604 Viruses Viruses 785 0   NTclustered gi|1920148641|gb|MW184352.1| 2697049 g18930 i0 100 100 425 0 100 0 1 425 9247 9671 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/AUS/VIC15830/2020, complete genome blastn 42500 785 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
6010696 6010696 PRJNA929922_P_NODE_7685_length_570_cov_2.362173_g7162_i0 PRJNA929922 7685 570 2.362173 13.4643861 Betacoronavirus pandemicum 3418604 Viruses Viruses 1053 0   NTclustered gi|2120441607|gb|OK610058.1| 2697049 g7162 i0 100 100 570 0 100 0 1 570 4484 5053 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-LC0329357/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 57000 1053 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7283486 7283486 PRJNA929922_P_NODE_10166_length_519_cov_12.320628_g135_i1 PRJNA929922 10166 519 12.320628 63.94405932 Betacoronavirus pandemicum 3418604 Viruses Viruses 837 0   NTclustered gi|2187133701|emb|OV752558.1| 2697049 g135 i1 98.934 104.190751445087 469 3 100 2 52 519 13833 14300 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 54075 837 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9834767 9834767 PRJNA929922_P_NODE_2568_length_872_cov_2.177722_g2130_i0 PRJNA929922 2568 872 2.177722 18.98973584 Betacoronavirus pandemicum 3418604 Viruses Viruses 1400 0   NTclustered gi|2172187095|gb|OM094982.1| 2697049 g2130 i0 99.869 99.2454128440367 761 1 98 0 15 775 15908 15148 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/54894058/2020, complete genome blastn 86542 1400 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9835620 9835620 PRJNA929922_P_NODE_908_length_1469_cov_4.820201_g617_i0 PRJNA929922 908 1469 4.820201 70.80875269 Betacoronavirus pandemicum 3418604 Viruses Viruses 2713 0   NTclustered gi|2191571899|gb|OM624025.1| 2697049 g617 i0 100 100 1469 0 100 0 1 1469 525 1993 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-CDC-LC0513952/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes, complete cds; and ORF10 protein (ORF10) gene, partial cds blastn 146900 2713 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11111130 11111130 PRJNA929922_P_NODE_809_length_1579_cov_5.222444_g536_i0 PRJNA929922 809 1579 5.222444 82.46239076 Betacoronavirus pandemicum 3418604 Viruses Viruses 2916 0   NTclustered gi|2633295214|emb|OY962987.1| 2697049 g536 i0 100 100.000633312223 1579 0 100 0 1 1579 11272 9694 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 157901 2916 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12386802 12386802 PRJNA929922_P_NODE_890_length_1490_cov_4.985886_g601_i0 PRJNA929922 890 1490 4.985886 74.2897014 Betacoronavirus pandemicum 3418604 Viruses Viruses 2715 0   NTclustered gi|2557386755|emb|OY645156.1| 2697049 g601 i0 100 98.6577181208054 1470 0 99 0 1 1470 8331 6862 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 147000 2715 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12386908 12386908 PRJNA929922_P_NODE_96190_length_261_cov_1.191489_g95650_i0 PRJNA929922 96190 261 1.191489 3.10978629 Potyvirus citrulli 3240504 Viruses Viruses 422 1.57e-113   NTclustered gi|641481296|gb|KF274031.1| 146500 g95650 i0 95.802 100.306513409962 262 10 100 1 1 261 2098 1837 Watermelon mosaic virus, complete genome blastn 26180 422 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus citrulli
12387162 12387162 PRJNA929922_S_NODE_21290_length_346_cov_0.926740_g21066_i0 PRJNA929922 21290 346 0.92674 3.2065204 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 6.99e-9   NTclustered gi|2165835005|emb|OV196273.1| 2697049 g21066 i0 95.652 13.0809248554913 46 2 13 0 1 46 29954 29909 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4526 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
13660606 13660606 PRJNA929922_P_NODE_411_length_2321_cov_5.803826_g222_i0 PRJNA929922 411 2321 5.803826 134.70680146 Betacoronavirus pandemicum 3418604 Viruses Viruses 4287 0   NTclustered gi|1854182511|gb|MT605815.1| 2697049 g222 i0 100 100 2321 0 100 0 1 2321 4432 2112 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome blastn 232100 4287 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14934844 14934844 PRJNA929922_P_NODE_34192_length_361_cov_2.104167_g33652_i0 PRJNA929922 34192 361 2.104167 7.59604287 Betacoronavirus pandemicum 3418604 Viruses Viruses 665 0   NTclustered gi|2233509774|emb|OW527479.1| 2697049 g33652 i0 100 99.7229916897507 360 0 99 0 2 361 8728 8369 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 36000 665 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16210723 16210723 PRJNA929922_P_NODE_95633_length_261_cov_1.819149_g95093_i0 PRJNA929922 95633 261 1.819149 4.74797889 Betacoronavirus pandemicum 3418604 Viruses Viruses 483 7.12e-132   NTclustered gi|2108508411|emb|OU769759.1| 2697049 g95093 i0 100 100 261 0 100 0 1 261 15046 14786 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 26100 483 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16210835 16210835 PRJNA929922_S_NODE_12333_length_404_cov_1.138973_g12109_i0 PRJNA929922 12333 404 1.138973 4.6014509200000004 Betacoronavirus pandemicum 3418604 Viruses Viruses 87.9 1.06e-12   NTclustered gi|2565362283|emb|OY635503.1| 2697049 g12109 i0 94.643 14.6287128712871 56 3 14 0 1 56 2269 2214 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 5910 87.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16211755 16211755 PRJNA929922_S_NODE_7393_length_462_cov_39.647815_g7169_i0 PRJNA929922 7393 462 39.647815 183.1729053 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 582 1.29e-161   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g7169 i0 91.469 0.913419913419913 422 35 91 1 2 423 6689 7109 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 422 582 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
17486362 17486362 PRJNA929922_S_NODE_26834_length_324_cov_3.621514_g26610_i0 PRJNA929922 26834 324 3.621514 11.73370536 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 494 4.21e-135   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g26610 i0 94.136 1 324 19 100 0 1 324 2126 2449 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 324 494 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
18757139 18757139 PRJNA929922_P_NODE_1115_length_1305_cov_6.107955_g799_i0 PRJNA929922 1115 1305 6.107955 79.70881275 Betacoronavirus pandemicum 3418604 Viruses Viruses 2410 0   NTclustered gi|1920148641|gb|MW184352.1| 2697049 g799 i0 100 100 1305 0 100 0 1 1305 6484 5180 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/AUS/VIC15830/2020, complete genome blastn 130500 2410 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21307993 21307993 PRJNA929922_P_NODE_12777_length_483_cov_4.504878_g12244_i0 PRJNA929922 12777 483 4.504878 21.75856074 Betacoronavirus pandemicum 3418604 Viruses Viruses 874 0   NTclustered gi|2449545766|gb|OQ517324.1| 2697049 g12244 i0 100 97.7287784679089 473 0 98 0 11 483 14279 14751 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/USA_UT-IDEL-2023021533_2023_NC_045512.2_NC_045512.2/2023 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 47203 874 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21309278 21309278 PRJNA929922_P_NODE_57_length_8811_cov_7.153353_g26_i0 PRJNA929922 57 8811 7.153353 630.28193283 Betacoronavirus pandemicum 3418604 Viruses Viruses 8453 0   NTclustered gi|1854182511|gb|MT605815.1| 2697049 g26 i0 100 100.272386789241 4577 0 100 0 4235 8811 21776 26352 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome blastn 883500 8453 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22583869 22583869 PRJNA929922_P_NODE_258_length_3361_cov_8.764599_g114_i0 PRJNA929922 258 3361 8.764599 294.57817239 Betacoronavirus pandemicum 3418604 Viruses Viruses 6196 0   NTclustered gi|2532316115|gb|OR240433.1| 2697049 g114 i0 99.97 99.9107408509372 3358 1 99 0 4 3361 26515 29872 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/CHN/SH-P09-2-Wuhan/2020, complete genome blastn 335800 6196 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22584591 22584591 PRJNA929922_P_NODE_818_length_1572_cov_7.402935_g543_i0 PRJNA929922 818 1572 7.402935 116.3741382 Betacoronavirus pandemicum 3418604 Viruses Viruses 2854 0   NTclustered gi|1920148641|gb|MW184352.1| 2697049 g543 i0 100 100.508905852417 1545 0 100 0 1 1545 21747 20203 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/AUS/VIC15830/2020, complete genome blastn 158000 2854 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22585249 22585249 PRJNA929922_S_NODE_36238_length_298_cov_1.711111_g36014_i0 PRJNA929922 36238 298 1.711111 5.09911078 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 385 2.3999999999999996e-102   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g36014 i0 91.166 1.51342281879195 283 25 95 0 16 298 5866 5584 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 451 385 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
23858949 23858949 PRJNA929922_P_NODE_158859_length_242_cov_0.911243_g158319_i0 PRJNA929922 158859 242 0.911243 2.20520806 Potyvirus citrulli 3240504 Viruses Viruses 438 1.4299999999999999e-118   NTclustered gi|641481296|gb|KF274031.1| 146500 g158319 i0 99.583 2.97520661157025 240 1 99 0 3 242 4031 3792 Watermelon mosaic virus, complete genome blastn 720 438 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus citrulli
26835183 26835183 PRJNA929922_S_NODE_45801_length_277_cov_4.205882_g45577_i0 PRJNA929922 45801 277 4.205882 11.65029314 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 121 1.09e-29   NR WKU61618.1 3063761 g45577 i0 87 0.747292418772563 69 9 74.7 0 207 1 1662 1730 WKU61618.1 polyprotein [Zebrafish picornavirus 2] diamond 207 121 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
27436008 27436008 PRJNA929922_S_NODE_62483_length_249_cov_1.750000_g62259_i0 PRJNA929922 62483 249 1.75 4.3575 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 64.3 1.06e-9   NR AVM87439.1 3063761 g62259 i0 54.9 0.614457831325301 51 23 61.4 0 91 243 928 978 AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1] diamond 153 64.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Danio blood picornavirus/Zebrafish picornavirus 2
32435106 32435106 PRJNA929922_S_NODE_38719_length_292_cov_1.922374_g38495_i0 PRJNA929922 38719 292 1.922374 5.61333208 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 67.4 1.46e-10   NR WZI33513.1 3063761 g38495 i0 41.1 3.97602739726027 95 48 92.5 2 284 15 885 976 WZI33513.1 MAG: polyprotein, partial [Crohivirus A] diamond 1161 67.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Crohivirus Danio blood picornavirus/Zebrafish picornavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;